Gene detail information of Glyur000336s00018109 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G30990.1 | 0 | ARM repeat superfamily protein |
| NR | XP_004492742.1 | 0 | PREDICTED: small subunit processome component 20 homolog [Cicer arietinum] |
| trEMBL | tr|G7JA73|G7JA73_MEDTR | 0 | DRIM (Down-regulated in metastasis)-like protein {ECO:0000313|EMBL:AES71901.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00336 | 110625 | 133078 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000336s00018109.1 | PF07539.7 | DRIM | 916 | 1059 | 3.40E-31 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.267 |
| SRR1783600 | control | 7.225 |
| SRR1783602 | moderate drought stress | 10.167 |
| SRR1811619 | moderate drought stress | 10.040 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.679 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.631 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.410 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.360 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.841 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.914 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.427 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.468 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 17.339 |
| SRR2868004 | Drought Stress (root) | 19.961 |
| SRR2967015 | Control (root) | 19.903 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.677 |
| SRR9715740 | Leaf | 8.486 |
| SRR9715741 | Leaf | 9.099 |
| SRR9715739 | Root | 0.680 |
| SRR9715742 | Root | 10.837 |
| SRR9715743 | Root | 9.337 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.893 |
| SRR8749028 | MeJA induced 9h | 13.505 |
| SRR8749029 | MeJA induced 9h | 8.475 |
| SRR8749030 | Uninduced | 5.323 |
| SRR8749031 | Uninduced | 4.233 |
| SRR8749032 | Uninduced | 4.594 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 17.661 |
| SRR8400027 | Control - Root | 17.370 |