Gene detail

Gene detail information of Glyur000336s00018108

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G13800.1	2.00E-104	Protein of unknown function (DUF803)
NR	XP_003601649.1	5.74E-177	Magnesium transporter NIPA2 [Medicago truncatula]
Swissprot	tr\|Q94AH3\|NIPA4_ARATH	3.00E-146	Probable magnesium transporter NIPA4
trEMBL	tr\|G7JA72\|G7JA72_MEDTR	2.00E-177	Magnesium transporter NIPA2-like protein {ECO:0000313\|EMBL:AES71900.1}

Sequence

Transcript Sequence

>Glyur000336s00018108.1
ATGGGGATATCCAAAGACAACGTTATTGGGCTTGTGCTGGCTCTCTCTTCCAGCATTTTCATTGGCTCTAGCTTTATAATAAAAAAGATGGGTCTTAAAAAAGCTGCTGCCAATAATGGGACGAGAGCAGCCTCAGGAGGGCATTCATATCTGTATGAACCGAGTTGGTGGGCTGGAATGATTTCAATGGTCGTTGGGGAAATAGCCAATTTTGCAGCTTATGCATTTGCACCTGCCATCCTTGTAACTCCTTTGGGAGCTTTAAGCATCATTTTCAGATTGCACATATTTGGAGTGCTTGGTTGTGCTCTCTGTATGGTGGGATCTACAACTATTGTTCTGCATGCACCACATGAGAAAGACATTCACTCTGTCAAGGAAGTATGGCAGCTTGCTACAGAACCAGGTTTTATTGTATACACTTGTCTTGTGGTGGTANTGGTTGCAACCCTTATTTTCCGTTATGCGGGACCTTATGGTCAGAGCCATATGATCATATATGTGGCAATATGTTCTCTCACAGGCTCAATTACGGTCATGAGTGTCAAAGCAGTCGGAATAGCTTTGAAGCTTTCTTTTGAAGGGATGAATCAGTTTATTTACTTTGAGACCTGGTTCTTTACAGTGGTTGTGATAGGATGTTGCCTTATGCAAATCAACTACTTGAACAAGGCTTTGGACACCTTTAACACTGCTGTCATATCACCAGTTTACTATGTAGCATTCACATCATTTACCATCATCGCCAGCATGATCATGTTTAAGGAATGGGACACACAAAATGCAACACAAATTGCTACTGAGTTGTGTGGGTTTGTCACAATTTTATCTGGGACATTCCTCCTTCACAGAACTATGGATTTGGGAAATAAACCTGCAGAAGNCCCTGTTGATTCAAGTCCACAACATTCTAATAATTCTCAGACACCAGTTAGGAATAATGAAATTTAATTTGAATCTCACATCTCCTTCACTTTTATGTTCCCTCTCCCAAGCTAATTAAACACCCCTTGCTATTGTTTGGTTATAAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00336	105573	109081	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0015693 magnesium ion transport

cellular_component
GO:0016021 integral component of membrane

molecular_function
GO:0015095 magnesium ion transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000336s00018108.1	PF05653.9	Mg_trans_NIPA	4	289	2.50E-124

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.544
SRR1783600	control	1.457
SRR1783602	moderate drought stress	0.851
SRR1811619	moderate drought stress	0.829

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.554
DRR006520	Root Summer glycyrrhizin high producing strain	1.769
DRR006521	Root Winter glycyrrhizin high producing strain	0.108
DRR006522	Root Winter glycyrrhizin high producing strain	0.033
DRR006523	Root Summer glycyrrhizin low producing strain	0.532
DRR006524	Root Summer glycyrrhizin low producing strain	0.433
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.751
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.622

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.833
SRR2868004	Drought Stress (root)	0.305
SRR2967015	Control (root)	0.653

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.221
SRR9715740	Leaf	0.751
SRR9715741	Leaf	0.510
SRR9715739	Root	0.283
SRR9715742	Root	0.354
SRR9715743	Root	1.582

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.025
SRR8749028	MeJA induced 9h	0.629
SRR8749029	MeJA induced 9h	0.232
SRR8749030	Uninduced	0.753
SRR8749031	Uninduced	0.705
SRR8749032	Uninduced	0.613

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.858
SRR8400027	Control - Root	4.441