Gene detail

Gene detail information of Glyur000336s00018099

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G43670.1	0	Sec23/Sec24 protein transport family protein
NR	XP_004502219.1	0	PREDICTED: protein transport protein SEC23-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q9SFU0\|SC24A_ARATH	1.00E-09	Protein transport protein Sec24-like At3g07100
trEMBL	tr\|G8A123\|G8A123_MEDTR	0	Protein transporter Sec23-like protein {ECO:0000313\|EMBL:KEH43940.1}

Sequence

Transcript Sequence

>Glyur000336s00018099.1
CTTTGCTTGCCACGGCGTTGGCAATGAAACTGTGTGCCGCTTTCCTTTTGTAAAGTTAAAAACTATTAAGCAGTAAACCAAAACCCACACAGATACAGTAGATTAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGTGGATCGATCATCGATCGGGGAATAATGGATTTCGTGGAATTGGAGGCAGTGGAAGGCCTCCGTTGGTCATGGAATTCATGGCCAGCTTCTTCTTCTTCTTCTTCTTCCTCGAAATCCGAACTAGTAATCCCACTAAGCATCATGTGCACCCCTTTGATGCAGCAACAAGGCACAGAGCAACTACCCCTTCTCCCTTACGATCCACTCCTCTGCACCCGATGCGGCGCCGTTTTGAACCCTTACGCTCGTCTTGACTACCAGTCACGCATCTGGCACTGTCCCTTTTGTTCCCAACGGAACCCTTTCCCTCGCTCTCTCCTCGCCGACACCAACCTCCCCGCTGAACTCTTCCCTACCTACACCACCGTCGAGTACTCCCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCATTCTTCACCTTCACCCTAATGTTTCCCCTGCTTTTGTCTTCGTCGTTGATGTTTCCACCTCCGAGGATGAACTTTGTCATCTCAAGAACGAGCTCTTGCTTCTCCTCCATTACTTTCCTGATAACGCACTCGTCGCTTTGCTCACGTTCGATTCTATGGTTTATCTCCATGATCTCCGGTTTTCTCACTGTTCTAGGCTCGTCGTCTTTCACGGGGACCGCCAACTATCCCCCAATCAGATCCGGCAGTTCCTCAATATTAGCCGCTCCCACCAGCTGCATCTTGGACAAACACCATCTGTCCCTAAGCAGGGGTTTCTGTTGCCAATTTCAGAATGTGAGTTCAGTATCACTGCTGCAATTGAAGACATCCNTTCTACATGCAACTTCAGGTCTGGCATCCGCCCCCCGAGGTCCACGGGGGCTGCAATTTCAGCTGCCCTTGGACTTTTAGAGTCTTGTCTCTTAAATACAGGCTCCAGGATCATGCTCTTCACGTCTGGACCTGCTACTATAGGGCCGGGACTGGTTGTGGACCCCGAACTCCGCCGAGCCATGAGAACCCACCATGACATTTTCAATGGGCAGGCGAGANACCATGCCAAATCTTGCAGTTTCTACAAGCAGATTGCCAAGAGGCTGTCTGATGCATCTGTTGTTCTTGATCTATTTGCTTGCTCCCTTGACCAAGTTGGAGCAGCTGAGCTTCGAGAGCCCATTGAGCACTCGGGTGGATCTATGATTCTTGCAGAATCCTTTGAATCGGATCAATTCAGGAAATGTCTTAGGCACTTATTTAAACGCGATGACGAGGGCTATTTGAAGATGAATTTTGATGCAACCATTGAAATAGTGACCACTAAAGATGTCAAAATCTGTGGAGCACTTGGTCCTTGTGTGTCTCTTAGGAAAAAGAACAATTTGGTGAGTGAGGCTGAGGTTGGACAAGGTGGTACCTACATTTGGAAGTTGAATACACTGACCGACAAAACTTGCATTGCTTTTTTCTTCCAAGTGAGCGATGAACAGAAAATTCAACCCGGCTCTGCATTCTTAATTCAGTTTATAACACAATACAGGCAGGGGAANATGGGACTCCGAAAAAGAGTCACGACTGCTGCAAGAAGATGGGTTGCAAACCATTCTGCAGATATTGCTGCTGGGTTTGATCAAGAAGCCGCAGCTTCAGTTATGGCTAGACTTGCTATTCTCCGGGCAGAGACATGCTATGCCCGTGATGTCATTAGATGGCTCGATGACACACTTATTCGTTTTACCTCCAAGTTTGGGGACTATGTGCCAGAAGATCCTTCTTCCTTCCGCCTATCTTCCACCTTTTCCCTCTATCCCCAGTTTATGTTCCACTTANGGCGATCTCAATTTATTGATGTCTGTAACACCGCTCCTGATGAAACTGCATATTTCCGGCTTATGCTGAACCGTGAGGGAGTAGTGGGCTCTCTTATAATGATTCAACCCACACTTTTTCAATATTCATTTGATGGGCCACCTGTTCCAGTACTTCTAGATATTCGTTCCATTTGTCCTGATTCTATCTTGCTCTTTGATTCTTTCTTCCATGTGGTGATTCATTACGGGTCCAAGATCGCNCAGTGGAAGAAGCTTGGTTATGATAAGGACCCAAATCATGAGAACTTTAGAAAGCTGTTGGAAGCCCCAGAAATAGATGCAGAGCAATTGGTGGCTGAAAGGGTCCCAGTGCCAAAGATTATAAGATGTGACCAGCATAGTAGTCAGGCTAGGTTTCTTCTTGCCAAGTTGAATCCATCTGTTACTCAAAATTCAACATACACAGATGGTTCGGATATTATATTTACCGATGACTTGAGCTTGCAAGTNTTTCTAGATCAGTTGCAGATACTGGCAGTGCAAGGCTGATAAAGAAGATCAATTCATTAAGCTTATTCTCTTTATTATGGTGNCATGAAAAAGATAAGAAATCTGTAAGTAGTTTTCAAAGAAGAGGTTTCATGTTTTCGGCAGATAGTGTCTCCTTGTTTTTTTTACTGAGTTGTAAAATATCTGATTTCTTTGGTGTGATTAGAATATGATTTTGTCAATTAGACTAGGTTTTGAAGATGTAGCATACTGCACAAGGTTACCATTAAGCTGACTAGAAACTGTATTAACCCCCAGTTTCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00336	59308	62764	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006886 intracellular protein transport

GO:0006888 ER to Golgi vesicle-mediated transport

cellular_component
GO:0030127 COPII vesicle coat

molecular_function
GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000336s00018099.1	PF04810.10	zf-Sec23_Sec24	59	97	1.40E-15
Glyur000336s00018099.1	PF04811.10	Sec23_trunk	138	397	3.90E-52
Glyur000336s00018099.1	PF08033.7	Sec23_BS	407	506	6.40E-22
Glyur000336s00018099.1	PF04815.10	Sec23_helical	520	620	1.40E-28
Glyur000336s00018099.1	PF00626.17	Gelsolin	633	719	5.90E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	14.568
SRR1783600	control	14.817
SRR1783602	moderate drought stress	12.340
SRR1811619	moderate drought stress	12.021

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.799
DRR006520	Root Summer glycyrrhizin high producing strain	13.487
DRR006521	Root Winter glycyrrhizin high producing strain	74.877
DRR006522	Root Winter glycyrrhizin high producing strain	73.155
DRR006523	Root Summer glycyrrhizin low producing strain	17.779
DRR006524	Root Summer glycyrrhizin low producing strain	17.476
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.919
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.925

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.931
SRR2868004	Drought Stress (root)	8.961
SRR2967015	Control (root)	11.612

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.705
SRR9715740	Leaf	5.101
SRR9715741	Leaf	5.967
SRR9715739	Root	8.845
SRR9715742	Root	23.738
SRR9715743	Root	19.438

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	25.209
SRR8749028	MeJA induced 9h	82.204
SRR8749029	MeJA induced 9h	29.054
SRR8749030	Uninduced	13.304
SRR8749031	Uninduced	9.405
SRR8749032	Uninduced	10.864

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.723
SRR8400027	Control - Root	12.974