Gene detail information of Glyur000336s00018092 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G44300.1 | 7.00E-24 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
| NR | XP_007163836.1 | 2.15E-41 | hypothetical protein PHAVU_001G268300g [Phaseolus vulgaris] |
| Swissprot | tr|O64864|YLS3_ARATH | 1.00E-27 | Protein YLS3 (Precursor) |
| trEMBL | tr|V7D2S1|V7D2S1_PHAVU | 8.00E-42 | Uncharacterized protein {ECO:0000313|EMBL:ESW35830.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00336 | 33391 | 34817 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000336s00018092.1 | PF14368.1 | LTP_2 | 20 | 102 | 9.20E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 48.502 |
| SRR1783600 | control | 48.456 |
| SRR1783602 | moderate drought stress | 19.223 |
| SRR1811619 | moderate drought stress | 19.687 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 38.939 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 37.914 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 81.462 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 80.067 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 29.874 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 30.920 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.085 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.090 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 76.934 |
| SRR2868004 | Drought Stress (root) | 41.196 |
| SRR2967015 | Control (root) | 33.289 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.177 |
| SRR9715740 | Leaf | 4.119 |
| SRR9715741 | Leaf | 8.116 |
| SRR9715739 | Root | 33.249 |
| SRR9715742 | Root | 25.979 |
| SRR9715743 | Root | 29.524 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.503 |
| SRR8749028 | MeJA induced 9h | 0.722 |
| SRR8749029 | MeJA induced 9h | 3.818 |
| SRR8749030 | Uninduced | 0.376 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.127 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 91.529 |
| SRR8400027 | Control - Root | 99.405 |