Gene detail

Gene detail information of Glyur000336s00018091.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G55270.1	4.00E-166	Galactose oxidase/kelch repeat superfamily protein
NR	XP_004504335.1	0	PREDICTED: F-box/kelch-repeat protein At1g55270-like [Cicer arietinum]
COG	YP_004368597.1	6.00E-07	Kelch repeat type 1-containing protein [Marinithermus hydrothermalis DSM 14884]
Swissprot	tr\|Q93W93\|FBK22_ARATH	0	F-box/kelch-repeat protein At1g55270
trEMBL	tr\|G7LHY4\|G7LHY4_MEDTR	0	Galactose oxidase/kelch repeat protein {ECO:0000313\|EMBL:AET04178.1}

Sequence

Transcript Sequence

>Glyur000336s00018091.1
ATGAACCAGCTAATTGAACACACTGCCAATGCTCAAAGGAGTTCTAGAGCTCAAGCTCCACTGGTTGATTCTGTTTCTTGCTACTGTAAAGTAGATTCAGGCCTGAAAACTGTTGCTGGGGCAAGGAAATTTGTTCCAGGATCAAAGATGTGTATCCAACCCGACATTAATCCGAACACACATAAGAGCAAAAACTCACATAAAGAAAGGACAAGAGTTCAGCCTCCTCTCATACCTGGCCTTCCTGATGATCTTGCCATCGCTTGTTTGATTCGAGTACCCCGGATCGAGCACAGGAAACTACGTTTGGTTTGCAAGAGATGGCACCGCCTTCTGTCTGGAAACTTCTTTTATTCGCTCAGGAAGAGCCTTGGAATGGCAGAAGAGTGGGTATATGTCATCAAAAGAGACCGCGATGGAAGACTNTCATTTCATGCTTTTGATCCCACCTACCAACTGTGGCAACCCCTCCCGCCGGTTCCTGGGGAATATTCTGAAGCATTGGGGTTTGGCTGTGCAGTTCTTAGTGGTTGCCACCTGTACTTATTTGGTGGAAGAGATCCTCTGAGGGGATCTATGAGACGAATTCCAAGAACTCTTCGATCTGCTGAAGTTTATGACCCCAACCGGAACAGGTGGAACTTCATCCCGGAGATGAGCACAGCCATGGTGCCCTTTATTGGTGTTGTTCACAATGGAACATGGTTTTTGAAGGGACTTGGGTCCGGTGGCGATGTCATGTGTGATGCCTATTCACCTGAGACCGATACCTGGACCCCGGTTACTAATGGAATGGTAAGTGGTTGGCGTAATCCTTGTATTTCACTGAACGGACAACTCTATGCGCTTGATTGCCAGGACGGATNCAAGCTCTCGGTATATGACGGAGCAACAGATTCGTGGAAGAAGTTTATCGATAGCAAACTTCATTTGGGTAGCTCTCGTGCTCTCGATGCTGCTGCACTTGTTTCCCTTAATGGAAAGCTGTGCATTATCCGCAACAATATGAGCATCAGTCTAGTTGATGTNTCAAGTCCTAACAAACAAATAGAAAGCAACCCTCACCTTTGGGAAAATATTGCTGGAGAAGGTCATCTCAGGACATTGGTTAGGAACTTATGGTCAAGTATAGCAGGACGTGGTGGTTCGAAGAGTCACATTGTTCGATGTCAGGACGCGATATTTAGAATTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00336	27929	31567	+

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000336s00018091.1	PF00646.28	F-box	78	116	5.00E-06
Glyur000336s00018091.1	PF01344.20	Kelch_1	172	220	1.10E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.764
SRR1783600	control	4.890
SRR1783602	moderate drought stress	4.230
SRR1811619	moderate drought stress	4.095

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.861
DRR006520	Root Summer glycyrrhizin high producing strain	8.355
DRR006521	Root Winter glycyrrhizin high producing strain	7.476
DRR006522	Root Winter glycyrrhizin high producing strain	6.844
DRR006523	Root Summer glycyrrhizin low producing strain	7.583
DRR006524	Root Summer glycyrrhizin low producing strain	6.898
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.691
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.797

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.932
SRR2868004	Drought Stress (root)	11.787
SRR2967015	Control (root)	11.716

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.708
SRR9715740	Leaf	7.009
SRR9715741	Leaf	9.887
SRR9715739	Root	4.681
SRR9715742	Root	7.054
SRR9715743	Root	6.286

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.010
SRR8749028	MeJA induced 9h	9.404
SRR8749029	MeJA induced 9h	3.560
SRR8749030	Uninduced	10.734
SRR8749031	Uninduced	5.150
SRR8749032	Uninduced	3.581

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.614
SRR8400027	Control - Root	11.014