Gene detail

Gene detail information of Glyur000336s00018088

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G42500.1	3.00E-174	protein phosphatase 2A-3
NR	XP_007205603.1	0	hypothetical protein PRUPE_ppa009000mg [Prunus persica]
COG	YP_001541554.1	3.00E-41	metallophosphoesterase [Caldivirga maquilingensis IC-167]
Swissprot	tr\|Q9XGH7\|PP2A_TOBAC	0	Serine/threonine-protein phosphatase PP2A catalytic subunit
trEMBL	tr\|M5VZA9\|M5VZA9_PRUPE	0	Serine/threonine-protein phosphatase {ECO:0000256\|RuleBase:RU004273}

Sequence

Transcript Sequence

>Glyur000336s00018088.1
GAAGCTTCGAAAGCTTCGGTTTCTCTCTCCAGTTTCTCTCTCTCTCTCTCTCTCTCTCCGTAGAACTAGACTAGAAGCAAGGAAGAAGGAAGCTAAGGTGAGATCGATCGATCGATCGATCCAGTGCTTGCATAAATTCAAGGTGAGAAGAGAGCATGGATTCGAATTCACAAGGGAACCTAGATGAGCAGATTTCCCAACTTATGCAATGCAAGCCCTTATCCGAGCCAGAGGTAAGGGGTCTTTGTGACAAGGCAAAGGAGATTCTCACGGACGAGAGCAATGTCCAGCCCGTGAGAAGTCCTGTAACAATCTGTGGTGATATTCATGGGCAATTCCATGACCTTGCTGAGCTTTTTCGCATTGGAGGGAAGTGTCCAGATACGAATTACTTGTTTATGGGAGATTATGTTGATCGCGGCTATTACTCAGTTGAAACTGTATCACTTTTGGTTGCCCTTAAAGTNCGTTATCCTCAGCGTATCACTATTCTGAGAGGAAATCATGAAAGCCGTCAGATTACTCAAGTTTATGGATTTTATGATGAGTGCCTACGGAAGTATGGTAATGCTAATGTTTGGAAGATCTTCACTGATTTGTTTGATTACTTTCCATTGACAGCATTGGTTGAATCTGAAATATTTTGTCTTCATGGTGGGTTGTCCCCATCAATTGAAACCCTTGATAACATACGTAATTTTGACCGGGTACAAGAAGTTCCTCATGAGGGGCCAATGTGTGATCTTCTATGGTCTGATCCGGATGATCGCTGTGGTTGGGGTATCTCTCCTAGAGGTGCTGGATATACTTTTGGCCAGGACATATCTGAGCAATTTAACCATACAAATAACTTAAAGCTGATTGCCAGAGCTCATCAGCTGGTTATGGAAGGATATAACTGGGGTCATGATCAAAAAGTGGTTACCATATTTAGTGCACCTAATTATTGTTATCGATGTGGAAATATGGCATCCATCCTTGAAGTTGANGACTGCAAAGGACACACATTCATACAGTTTGAGCCAGCTCCAAGGAGGGGAGAGCCAGATGTAACCAGGAGAACACCTGATTACTTCCTATGATACATTATTGGATGAGTTGCTGTTACCAGCAACTACTGCCCTTCAAACTTATCTGTGTCAAAAGCAGAGCCGTGCTCCTGATTGGTCCTTGCATTTTCGATGTTAGGCTTCCTGGATATGCCATTTTTTCGAATTATAATTGTACATTTCCAAGAGAAGTGACGGAGCAGACGATGCTATTGTCGTGGGTGATATGTNTTGTTGCCATATGCGATGTATCATTTTTAATTTTTTCCAGTTTTCTCCTTTCCTNTTTTATTTGCTGCTCTTTTGGCCTTTTCTCAGTTTTGGAGGATTATTGATCAGGTGATGGGTTTCTGTAGATGGATGATGCTCTAAAATATCCTCTACTGGGTGCGTTATATTTTTTCCCCTTCGTTTGTTGAGAATATTTTTTAATAGGTAGTTTNTCTTGCTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00336	8394	13527	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K04382	PPP2C	EC:3.1.3.16	mRNA surveillance pathway	map03015
			MAPK signaling pathway - fly	map04013
			TGF-beta signaling pathway	map04350
			Hippo signaling pathway	map04390
			Hippo signaling pathway -fly	map04391
			Sphingolipid signaling pathway	map04071
			PI3K-Akt signaling pathway	map04151
			AMPK signaling pathway	map04152
			Autophagy - animal	map04140
			Autophagy - yeast	map04138
			Cell cycle - yeast	map04111
			Meiosis - yeast	map04113
			Oocyte meiosis	map04114
			Tight junction	map04530
			Adrenergic signaling in cardiomyocytes	map04261
			Dopaminergic synapse	map04728
			Long-term depression	map04730
			Hepatitis C	map05160
			Chagas disease (American trypanosomiasis)	map05142

Gene Ontology

molecular_function
GO:0016787 hydrolase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000336s00018088.1	PF00149.23	Metallophos	50	242	2.50E-41

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.283
SRR1783600	control	15.466
SRR1783602	moderate drought stress	13.636
SRR1811619	moderate drought stress	13.545

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	28.995
DRR006520	Root Summer glycyrrhizin high producing strain	27.871
DRR006521	Root Winter glycyrrhizin high producing strain	9.872
DRR006522	Root Winter glycyrrhizin high producing strain	9.688
DRR006523	Root Summer glycyrrhizin low producing strain	20.162
DRR006524	Root Summer glycyrrhizin low producing strain	20.067
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.556
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.633

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	33.777
SRR2868004	Drought Stress (root)	26.779
SRR2967015	Control (root)	29.088

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.514
SRR9715740	Leaf	8.835
SRR9715741	Leaf	10.493
SRR9715739	Root	24.356
SRR9715742	Root	20.855
SRR9715743	Root	22.122

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	19.407
SRR8749028	MeJA induced 9h	11.821
SRR8749029	MeJA induced 9h	10.984
SRR8749030	Uninduced	5.715
SRR8749031	Uninduced	3.099
SRR8749032	Uninduced	4.151

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	28.652
SRR8400027	Control - Root	27.114