Gene detail information of Glyur000335s00017470 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G31350.2 | 2.00E-121 | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein |
| NR | XP_003550149.1 | 0 | PREDICTED: uncharacterized protein LOC100306431 isoform X1 [Glycine max] |
| trEMBL | tr|I1MWJ1|I1MWJ1_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G29670.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00335 | 157433 | 165283 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GTnc |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000335s00017470.1 | PF02485.16 | Branch | 108 | 221 | 4.80E-37 |
| Glyur000335s00017470.1 | PF02485.16 | Branch | 245 | 364 | 5.30E-36 |
| Glyur000335s00017470.2 | PF02485.16 | Branch | 108 | 327 | 2.80E-71 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 17.148 |
| SRR1783600 | control | 17.399 |
| SRR1783602 | moderate drought stress | 10.151 |
| SRR1811619 | moderate drought stress | 10.123 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.775 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.943 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.471 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.394 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.463 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.592 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.302 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.182 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 44.966 |
| SRR2868004 | Drought Stress (root) | 33.668 |
| SRR2967015 | Control (root) | 27.113 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 16.487 |
| SRR9715740 | Leaf | 11.740 |
| SRR9715741 | Leaf | 16.856 |
| SRR9715739 | Root | 8.310 |
| SRR9715742 | Root | 18.310 |
| SRR9715743 | Root | 14.819 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.498 |
| SRR8749028 | MeJA induced 9h | 8.603 |
| SRR8749029 | MeJA induced 9h | 5.142 |
| SRR8749030 | Uninduced | 2.064 |
| SRR8749031 | Uninduced | 0.921 |
| SRR8749032 | Uninduced | 1.649 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 32.504 |
| SRR8400027 | Control - Root | 38.971 |