Gene detail

Gene detail information of Glyur000335s00017469

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G19940.1	9.00E-79	Plastid-lipid associated protein PAP / fibrillin family protein
NR	XP_004498593.1	1.95E-133	PREDICTED: probable plastid-lipid-associated protein 8, chloroplastic-like [Cicer arietinum]
Swissprot	tr\|Q941D3\|PAP8_ARATH	3.00E-99	Probable plastid-lipid-associated protein 8, chloroplastic (Precursor)
trEMBL	tr\|A0A072VE99\|A0A072VE99_MEDTR	1.00E-129	Plastid lipid-associated protein {ECO:0000313\|EMBL:KEH39778.1}

Sequence

Transcript Sequence

>Glyur000335s00017469.1
TCTTCTTCTCTCTCCAATAAACGCCGAACTGGGATCCCCGAAAAGATAAGGCGAATATGAGATGCATACGTGGCATCACAGAGACCCAATANTTCCAACTCCAACTCGATTCTCATCCGACGTGGGATGGTGGGAACAACAGATTATTAGCCATAGAAGCTGCTGATTCATTACTGATTTTATTTCTGTGCGGCGGCATGGCTGCAGCTTCAGCTTCTTTGCTACCAGCTGGTTCCTTCGGACTCAGATGCCATCAAAACAACAACAATAACAATCCTCCAACAACAACAACAACAACAACACCCAAATCCATCATCAACTTCCGTTTCCCTAACCGCCACAACAGCTTCCGCGTCTCTGCAGCTTCCTCCGTTTCCATCTCCAACCCGCACGTGCGAACCGCCCCTGATGATCTCGTCGCTTCCCTTCTCTCAAAGGTGGTGCAAACGGATGGAGGAGTTTTACTGAAAAAGGAAGAACATAAAGAGGTGGCTGAAGTGACTCAGGAATTGCAGAAGTATTGCGTGAATGATCCTGTGAAATGCCCTTTAATATTTGGAGAGTGGGATGTGGTGTACTGTTCACAGCCAACATCACCTGGAGGTGGCTACAGGAGTGCATTGGGCCGGCTTTTCTTTAAAACGAAGCAAATGATTCAGGTTGTTGAAGCTCCTGATATTGTGAGAAACAAGGTNTCGTTTACTGCTTTAGGCTTCTTGGATGGAGAGGTGTCTCTGAAGGGAAACCTCAAGGCTCTGGATAGTGAATGGATTCAAGTTGTATTTGAAGCACCTGNATTGAAGTTAGGATCATGGCAAGTCCAATATGGCGGTCAGAGTGAAGTTAAACTCCGAATCACTTATGTAGATGAAAAAATCAGGCTAGGATTGGGTTCCAGGGGTTCCCTGTTTGTTTTCCAAAGAATATGAAATTGAAAATGCAATCAAAATTCCCTTCAGGAAAAAACTGAGATGAGTTTGTAACTTCACACTCTGCACACGTTCATGTATAATATGATTATGAGTGTATGTGTTAGATATTACTGAGAAAAAAATTTCCCCTTGGCTGTGGAGTTTGTCTCAAAATGCAGGGTGTGAATTAAGATACAATGCAATATATAGTGTAATTAACTTGCCACTGGGACAAACTTTCCATTTTTATCTGAAGAGATTATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00335	151322	154439	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000335s00017469.1	PF04755.7	PAP_fibrillin	120	250	3.10E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.333
SRR1783600	control	7.141
SRR1783602	moderate drought stress	7.597
SRR1811619	moderate drought stress	7.503

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.254
DRR006520	Root Summer glycyrrhizin high producing strain	6.006
DRR006521	Root Winter glycyrrhizin high producing strain	6.522
DRR006522	Root Winter glycyrrhizin high producing strain	6.552
DRR006523	Root Summer glycyrrhizin low producing strain	18.286
DRR006524	Root Summer glycyrrhizin low producing strain	18.306
DRR006525	Leaf Summer glycyrrhizin high producing strain	277.051
DRR006526	Leaf Summer glycyrrhizin high producing strain	269.208

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	20.101
SRR2868004	Drought Stress (root)	26.265
SRR2967015	Control (root)	23.869

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	144.592
SRR9715740	Leaf	191.000
SRR9715741	Leaf	137.686
SRR9715739	Root	6.598
SRR9715742	Root	8.954
SRR9715743	Root	7.063

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	17.678
SRR8749028	MeJA induced 9h	16.385
SRR8749029	MeJA induced 9h	13.219
SRR8749030	Uninduced	11.429
SRR8749031	Uninduced	16.876
SRR8749032	Uninduced	17.559

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.286
SRR8400027	Control - Root	10.772