Gene detail

Gene detail information of Glyur000335s00017466

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G24830.1	2.00E-66	Tetratricopeptide repeat (TPR)-like superfamily protein
NR	XP_004498596.1	4.30E-169	PREDICTED: pentatricopeptide repeat-containing protein At5g24830-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q8L6Y3\|PP396_ARATH	6.00E-78	Pentatricopeptide repeat-containing protein At5g24830
trEMBL	tr\|A0A072VDB6\|A0A072VDB6_MEDTR	6.00E-144	PPR containing plant-like protein {ECO:0000313\|EMBL:KEH39782.1}

Sequence

Transcript Sequence

>Glyur000335s00017466.1
ATGAGTGCGTTATTATTTGGTGCCTGCGAGGAACAAAAAAAGTTGCCATCGCATATTGCGTTTGCGAGATTTCTGAATCGCGCCATTCAGTCAAAAAAACAACGCTTTGCTCACATTTTCAGCTCCCAAAACGACGACGTCGTCGTCAAAAAAAAAAGGATTTGCTGCTCTGAAGAGGATATGGTGGTGTCGTCCACCAAGTATCTTCTGTCTGCTATTGGGAGAAAGTGCCAACTAAATGGTCAGGATTGTTCTTCATCGATGTACGACAAGAGTTTTGGTGATGACAAAGGCCCCGATGCTGTTTTCAATGCGTTGGATGCTATGCTAAAGTCTAGTTTAGAGCGCCTGAAGACGATAAAAAAAGCTTTGATGGAAAACATATCTTTGGTAAAGATGGGTCTTCAGGGATATGAAAAAAAATATAACCACACTGAAAATGCAGCCACCATTAGGTTTTTGTGCTTGGAAGGAAAAAAAGAAGCAGCTCTGTGGCTTCGTAGAAGAATGGTGCATAAAGGTATTCTCCCCGATGTATATACCCACAACCATATTGTAAATGGGTTGTGCAAAATTGGTCGTATGGAGAAAAAAAATTGCCTTGTTAGAGAGATGTTAGAGTTTGGTCCTCATCCCAACTGTGCCACTTATAACACTTTGATTAAGGGCTATTGCTCCATTGATGGTGTAAATAAAGCTTTGCATCTGTTCTCCACCATGGCCAATACTGGTATTCTGCCAAACAGGGTTACTTGTAACATACTGGTACATGCATTGTGTGAGAAAGGTCTTCAGAAGGAAGCTAAAATGTTGCTTGAAGAAAAAAAAAATGATGATAATGATGAAGAAATGCCCGATTTAGTTACCTCGACTATATTTAAAAAAAATCACTTCAAGAATGGAGCAATATTTCAGGCTCTCAGTCTTTGGAATGAGATGATTCAAAAGTGTACAAAAGTAGATGTTGTTGCATATAATGTTCTTATCAATGGATTTTGCAAGAGTCAACAGATGAATCTTGCATATGGATATGCATGCGGTGCTTGTAATTTAGGACGTCTTGATTTGGCGCTTTGGTTTCTTGATGAGATGGTGCAAAAAAAAAATCGACCAGATCTAATGACTTATACTGAACTTCTACCAGATCTAATAACTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00335	134335	136516	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000335s00017466.1	PF12854.2	PPR_1	173	205	3.40E-07
Glyur000335s00017466.1	PF13041.1	PPR_2	212	261	3.30E-14
Glyur000335s00017466.1	PF13041.1	PPR_2	297	334	1.00E-07
Glyur000335s00017466.1	PF01535.15	PPR	347	367	0.52

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.140
SRR1783600	control	2.757
SRR1783602	moderate drought stress	3.145
SRR1811619	moderate drought stress	3.813

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.805
DRR006520	Root Summer glycyrrhizin high producing strain	3.493
DRR006521	Root Winter glycyrrhizin high producing strain	2.906
DRR006522	Root Winter glycyrrhizin high producing strain	2.615
DRR006523	Root Summer glycyrrhizin low producing strain	2.032
DRR006524	Root Summer glycyrrhizin low producing strain	1.430
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.511
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.076

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.917
SRR2868004	Drought Stress (root)	5.403
SRR2967015	Control (root)	5.777

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.085
SRR9715740	Leaf	2.681
SRR9715741	Leaf	1.358
SRR9715739	Root	0.568
SRR9715742	Root	1.415
SRR9715743	Root	1.256

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.817
SRR8749028	MeJA induced 9h	5.487
SRR8749029	MeJA induced 9h	1.524
SRR8749030	Uninduced	1.048
SRR8749031	Uninduced	1.528
SRR8749032	Uninduced	1.625

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.982
SRR8400027	Control - Root	4.979