Gene detail

Gene detail information of Glyur000335s00017464.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G49600.1	ubiquitin-specific protease 26
NR	XP_006596140.1	PREDICTED: ubiquitin carboxyl-terminal hydrolase 26-like isoform X1 [Glycine max]
Swissprot	tr\|Q9SCJ9\|UBP26_ARATH	Ubiquitin carboxyl-terminal hydrolase 26
trEMBL	tr\|I1M9Q7\|I1M9Q7_SOYBN	Ubiquitin carboxyl-terminal hydrolase {ECO:0000256\|RuleBase:RU004435}

Sequence

Transcript Sequence

>Glyur000335s00017464.1
ATGGATAGAGTCATAGAGGTTTTGTATTATACAATGAGTAGACCAACAACTCGGAGTAAAAATAAAAGGCAGAGACAGGGGGATGATGGTGCCGGCACTTCTGAAATATGGAGGAAAATTCACAAAACAGGTGCGGTAACTGAAGATGATATGAACCAACTGTATATGATTTGGAAGCCGGTTTGCTCTGGCTGTCGTGTTAATACTAAAGACAACCCGAATTGCTTTTGTGCATTGGTTCCACCTCCAAATGGATCCCGGAAGTCTGGCTTGTGGCAGAAGATATCTGATTTTGTTGAAAGTCTTGGCCCTGACCCAAATGAGGATCTTCGTGTGTCTGCTGATTCACCTGCAGGTCTTACCAATCTCGGTGCGACCTGTTATGCCAACAGCATACTCCAGTGCTTATATATGAATAGATCTCTCCGAGAAGGCATATTTTCNATAGAACCAGATGTTTTACGGCAACAACCGGTGTTAGATCAACTGGCTCGGCTTTTTGTACAGTTGCATGTTAGTAAAAAGGCTTTCNTAGATTCTTCTCCATTTGTAAAAACACTGGAGTTAGACAATGGAGTGCAGCAGGATAGCCACGAGTTCCTGACATTGCTTCTGTCATTGCTTGAGCGTTGCCTGAGACATTCTAAAATTTCCAAGGCTAAAACGATGGTTCAAGATCTTTTCCGGGGAAGTGTGTCTCATGTGACAACGTGTTCACAATGTCAAAGAGACTCTGAAGCTTCTTACAAAATGGAAGACTTCTATGAGTTGGAGTTGAATGTCAAGGGATTGAAAAGTTTAGATGAGAGCTTAGATGATTACCTCACTGTTGAAGAGCTTAATGGAGACAATCAATATTTTTGTGAATCATGTAAAACAAGAGTTGATGCTACTCGCAGCATCAAGCTGCGTACATTACCTGATGTACTTAATTTTCAGCTTAAACGTTATGTCTTCCTTCCAAAGACAACAACAAAGAAGAAAATTACTTCTTCATTTTCATTTCCTGCTGAACTTGATATGCGCCACAGATTGTCTGAGCCACCTCAGTTTGAATTGATATATGACTTGTCAGCTGTACTAATTCACAAGGGAACTGCTGCTAATAGTGGTCATTACATTGCTCACATCAAGGATGAAAACACTGGGCAATGGTGGGAATTTGATGATGAGCATGTTACTAACTTGGGTCGTCATCCATTTGGTGAAGAAGCTTCATGTTCTACTTCTAAATCTGTTAAGATTGATGTAGATCATTCTGATTCCTCTGAAGCAAAGGTAGCTGACAGTAATGGAAATGGTTTAAATGCCACTGATTCACAATCTTTGCCCGTGGAGTCATTTTCATCTAGTGATGCATACATGTTGATGTACCATCTTAAGCATGCAAAAAATGTTGGTGAGAAAGGGGGCATGGTTTCTGGTGCTAACCACAAAGAAAGAGATGNTGATGCAGTTACTGCACAAGACAATGATTGTCTTCCTCCTCATTTTTGTGAAGAGATTCAAAATTTCAATGCCTCATATCTTGATGCTTGCGAGCAGTACAACCATAGGAAAGAGTTAGAATTGAGTTGTATCAACGAGAGGAGACAAGAAGTTCGATCTGTTTTAGTTGAAGCTCCTGTTCAACCACTGGAGCAACCATTTTTTTGGATTTATAGCGACTGGCTTCGCCAGTGGGCTGATAATGTTATTNCAACTGCTATCGACAACACATCTATCCAATGTTCACATGGGAAAGTCCCAGTGTCAAAGGTTACCTCAATGAAGCGATTGTCTTCTAAAGCATGGGATAAATTATTGTCTAAGTATGGTGGGGGACCTACACTTTCTCATGATGACTGCTGTTGGGATTGTCTGATTGATGGGGCTCAGAATGTGGTGTCAGCTGACACTTATCGGGATCGAAGAGAATCATTCAAGCGACTTGCACGGGATATTCTTGATGGAAACTGTGAAGAGGGAATGTTGCAGCAATGGTGGAAAAGAAAAGTTGCTGATGCTCCATCTGAAGCTGATGCTGGACCAACAGAAGCTATTAGTTGTCCACATGGGCAACTTATGCCTGAACAAGCTACTGGTGCTAAGCGGGTGCTTGTTCCTGAGGGTTTTTGGCTCTTCTTATATGATGATGCCACTTCTGTAAAACCTGATGATCTTCTGGGTTGCCCTACTTTTCCTTTAGACTCCAGAGAATGTTCCCATTGCAGTATTGAATTATCTGAAGTGGCTTGCATGGAGGACTCTTTGAGATTATTAAAACAAAGGCAGCGTCAGAGTCATGAGAAACTATTCAGTGGGAAAAGTATGCCACTCTCTTTTCATTGCAAGTATTTCTTAGTTCCTTCCTCTTGGATTTCAAAATGGAGAAATTACGTTAATCAAGCTGTNAAGAATTCAGATAAACCTGAAACATTAGATGGGATAATTGATTCAGTTATCTGTGAAAAGCACTCACGACTCATTGAAAGGCCTCCTGAACTGATTTTCAGACGCGGTGCTATAATCCCAAGAGAGTCTTCTGTAGGTGGCTTATCCATCATATCTGAGAATGATTGGAAATGCTTCTGTGAAGAATGGGGTGCTATTGAGACTAAAGGAATATCTGCAAAGATTGAGAATATTAATGATTCGGAGAATGCTATGGCTGGATCCTGTGAAGAGTTGCCAATATGCGACGATCAGTTGGTCNATTGGGATAAAGTAAATAATGAAAGTGGGAATGGTCAAATTGTGATCAAGACTTTTCCTGAGGTTTGTGAAAGTTGCATTGGAGANAGGGAAAGCTGTGAGTTAATGCAGAAACTCAACTATTGCAATGAGGATATATGTGTAGTTCTTGTCCGTGGGAAGGAGGTCCCTAAATCAATCTTGGAGGCTTCAAAGGGCTCTGTTGAGACAGATCGGCGGGTTTCTAAGCGCTCCCGGAAGAATAAAAATGGGAGTTCAATTAGTCTAAAAGTTTCTGCTTCAACATCAATTTACCAGCTGAAAATGATGATATGGGAATCCTTTGGGGTCGTCAAGGAAAACCAGATACTACAAAAAGGTGAAAGAACAATTGATATTGATGACGAAAGTGCCACTCTTGTGGATGTGAACATATTTGCTGGAGATCAGATTATTGTGAGGGATTCTGAGATCCATGAAAATAGAGATATTGCNGACGAGCTGTGTGGCGACGAGATAATGGAAACGCAGCATACCGAGGAAGGGTTTCGTGGAACACTTTTGACATCAAATGTTTCATCTCAGGTTGTTTAGGAAGTGCACTTTCATTGGCATCATCTTCTTTTGTAACATTTGTTGTGTGTATATATTCAAAGAGGAAAAAAAAATTCAATTGAATGAGAAAAGAAACAGTTTTGTGGAACACAACCATGTAAATCCTTGTCCATTGGGGACATGCCTAGCATTGAATTGGATGCTATTGTTCTTAAGCCA

Protein Sequence

>Glyur000335s00017464.1
MDRVIEVLYYTMSRPTTRSKNKRQRQGDDGAGTSEIWRKIHKTGAVTEDDMNQLYMIWKPVCSGCRVNTKDNPNCFCALVPPPNGSRKSGLWQKISDFVESLGPDPNEDLRVSADSPAGLTNLGATCYANSILQCLYMNRSLREGIFSIEPDVLRQQPVLDQLARLFVQLHVSKKAFXDSSPFVKTLELDNGVQQDSHEFLTLLLSLLERCLRHSKISKAKTMVQDLFRGSVSHVTTCSQCQRDSEASYKMEDFYELELNVKGLKSLDESLDDYLTVEELNGDNQYFCESCKTRVDATRSIKLRTLPDVLNFQLKRYVFLPKTTTKKKITSSFSFPAELDMRHRLSEPPQFELIYDLSAVLIHKGTAANSGHYIAHIKDENTGQWWEFDDEHVTNLGRHPFGEEASCSTSKSVKIDVDHSDSSEAKVADSNGNGLNATDSQSLPVESFSSSDAYMLMYHLKHAKNVGEKGGMVSGANHKERDXDAVTAQDNDCLPPHFCEEIQNFNASYLDACEQYNHRKELELSCINERRQEVRSVLVEAPVQPLEQPFFWIYSDWLRQWADNVIXTAIDNTSIQCSHGKVPVSKVTSMKRLSSKAWDKLLSKYGGGPTLSHDDCCWDCLIDGAQNVVSADTYRDRRESFKRLARDILDGNCEEGMLQQWWKRKVADAPSEADAGPTEAISCPHGQLMPEQATGAKRVLVPEGFWLFLYDDATSVKPDDLLGCPTFPLDSRECSHCSIELSEVACMEDSLRLLKQRQRQSHEKLFSGKSMPLSFHCKYFLVPSSWISKWRNYVNQAVKNSDKPETLDGIIDSVICEKHSRLIERPPELIFRRGAIIPRESSVGGLSIISENDWKCFCEEWGAIETKGISAKIENINDSENAMAGSCEELPICDDQLVXWDKVNNESGNGQIVIKTFPEVCESCIGXRESCELMQKLNYCNEDICVVLVRGKEVPKSILEASKGSVETDRRVSKRSRKNKNGSSISLKVSASTSIYQLKMMIWESFGVVKENQILQKGERTIDIDDESATLVDVNIFAGDQIIVRDSEIHENRDIADELCGDEIMETQHTEEGFRGTLLTSNVSSQVV

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00335	121590	129835	-

Gene family

Gene family	subfamily
Ubiquitin Family	USP

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006511 ubiquitin-dependent protein catabolic process

molecular_function

GO:0004843 thiol-dependent ubiquitin-specific protease activity

GO:0036459 thiol-dependent ubiquitinyl hydrolase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000335s00017464.1	PF00443.24	UCH	118	458	1.30E-51

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.875
SRR1783600	control	4.818
SRR1783602	moderate drought stress	3.732
SRR1811619	moderate drought stress	3.693

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.724
DRR006520	Root Summer glycyrrhizin high producing strain	7.767
DRR006521	Root Winter glycyrrhizin high producing strain	5.691
DRR006522	Root Winter glycyrrhizin high producing strain	5.420
DRR006523	Root Summer glycyrrhizin low producing strain	5.709
DRR006524	Root Summer glycyrrhizin low producing strain	5.729
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.045
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.050

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.731
SRR2868004	Drought Stress (root)	11.815
SRR2967015	Control (root)	12.071

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.866
SRR9715740	Leaf	7.011
SRR9715741	Leaf	5.968
SRR9715739	Root	0.989
SRR9715742	Root	6.739
SRR9715743	Root	7.924

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.501
SRR8749028	MeJA induced 9h	7.825
SRR8749029	MeJA induced 9h	5.330
SRR8749030	Uninduced	5.807
SRR8749031	Uninduced	4.474
SRR8749032	Uninduced	4.201

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.386
SRR8400027	Control - Root	15.772