Gene detail

Gene detail information of Glyur000335s00017462

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G10910.1	2.00E-123	mraW methylase family protein
NR	KEH39791.1	0	16S rRNA (cytosine(1402)-N(4))-methyltransferase [Medicago truncatula]
COG	YP_007310.1	6.00E-76	S-adenosyl-methyltransferase [Candidatus Protochlamydia amoebophila UWE25]
trEMBL	tr\|A0A072VDX8\|A0A072VDX8_MEDTR	0	16S rRNA (Cytosine(1402)-N(4))-methyltransferase {ECO:0000313\|EMBL:KEH39791.1}

Sequence

Transcript Sequence

>Glyur000335s00017462.1
CGAAGAGGTGAGTTGGTGGAACAAAAAATTGGGTGGGGTGTTTGAGACACTACTGTCTCTGAGACTGTCTGTCTAGGTCTGGANCAAGGTCCGGAGTGGAGGGAGCACAACTAGTTAAGAATTGCCATTGTCAATGGTCACAACTAGTGAGAATTAAAATGGGAACGGTTTCAAGGATATCGTCAGTGTTGTTGTCATCACTAATATTATCATCACCCAAACCTAAACTCATTCACCACCCTCTTCTTCGGCGCCACACCACCAACTATCTTCTACTTTCGAATTCAACAACTGTCAGAAGCAGCAGCAGCAGCAGTGTCAGAACCGCAAAGAGCAACAAGCACAAGTCAGAAGCAGCGCTTGCGAAGGAGAAGAGAAGGACGCGTTCCAACAGAGAGCTAGACGACGACGCTTTAATCGACCTCTTCAACAACAACTCCTTAACCTCTTCTTCTTCTTCTTCTTCTGAGGCTCATCAGGTAGTAGTTCATGTCCCTGTCATGCTGGCTGAAGTGTTGGACGTCTTCTCCAACTGTTCCTTATCCTCCTTCATCGATTGCACCCTCGGTGCCGCTGGCCACTCCACTGCCGTGATTAGGGGTCATCCGGAGTTGAAGTATTTTGTTGGGATGGATGTGGATCCTGTCGCACGTGACTTGGCTCTCCCTCGCATCAACTCTGTTTTGCGTGGTGATNGTGAGTCTGGTGTGAAGGTATTCACCGTGTTAAGGAATTTCAGACACATCAAGTCTGTGCTTAGAGAAACTGGTGAGGAGCACTTAGGGGATGCCGCCGCCATCGATGGCATCTTGATGGACCTNGGAATGTCATCTATGCAGGTGGATGATCCTCAAAGAGGATTTAGTGTGCTTGGTGATGGACCTCTTGATATGCGCATGGATCCTCAGGCAAGCCTTAAAGCAGAAGACGTATTAAATTCTTGGCCAGATTCTGAAGTGGGCCGTATCCTAAGGGACTATGGGGAAGAAAGTAATTGGCGTGCTCTGCAAAAGAAAATTGTCCAAGCCCGATCACATGGTGGATTGCATACCACTAGTGACTTGCTGGATCTTATTCGGCGTGTGACCCCTGCAATGAAAGGTGGAAGGCAAGGTTGGATAAAGACAGCAACCCGGGTGTTTCAAGCTTTGAGAATCGCTGTTAACGATGAACTGAAGACTCTTGAGGATTCCCTCTATTCTTGTTTTGACTGCCTTGCACCTGGGGGAAGGCTTGCTGTCATATCTTTTCACAGTTTGGAGGACAGAATTGTGAAGCAGACATTTCTTAATATAATTAAAGGGAGCAAAGACTTTGGGGAAGGGGAGAGTTTCAATAGTGATTTGAGGAAGATGAGTGATGGAATCAAAGAAAAAGAAACATGGGTAAGACATGTAATACATGGATCAAATGGAATAATACTCACAAAAAGACCAATCACACCATCAGAAGAAGAAGAGAAATTGAACCGCCGAAGTAGAAGTGCAAAGCTCAGGGTTATTCAGAAGCTTTAAAGACAAAACATGAGATTGTTGTTTGGAGTAGAGCTCTNAGAAATCTCTGCATTCTTAAACTTCTTTGTACCTTTGTTATCCCACATGTCCATCTTAGTAATATATGTTCACAACTTTTCATTAGAAGAAAAAGGTTAAAAGATTTTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00335	111414	114985	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0008168 methyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000335s00017462.1	PF01795.14	Methyltransf_5	110	450	1.10E-85

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	17.571
SRR1783600	control	17.482
SRR1783602	moderate drought stress	23.887
SRR1811619	moderate drought stress	23.229

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.861
DRR006520	Root Summer glycyrrhizin high producing strain	13.745
DRR006521	Root Winter glycyrrhizin high producing strain	18.836
DRR006522	Root Winter glycyrrhizin high producing strain	18.721
DRR006523	Root Summer glycyrrhizin low producing strain	15.907
DRR006524	Root Summer glycyrrhizin low producing strain	15.278
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.373
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.100

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.239
SRR2868004	Drought Stress (root)	10.074
SRR2967015	Control (root)	10.647

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.776
SRR9715740	Leaf	15.840
SRR9715741	Leaf	13.115
SRR9715739	Root	1.552
SRR9715742	Root	6.201
SRR9715743	Root	4.050

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.820
SRR8749028	MeJA induced 9h	7.242
SRR8749029	MeJA induced 9h	6.287
SRR8749030	Uninduced	3.864
SRR8749031	Uninduced	1.131
SRR8749032	Uninduced	2.527

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.776
SRR8400027	Control - Root	14.738