Gene detail information of Glyur000335s00017454 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G31150.1 | 4.00E-83 | endonuclease V family protein |
| NR | XP_003544632.1 | 7.65E-153 | PREDICTED: endonuclease V isoform X1 [Glycine max] |
| COG | YP_002250488.1 | 3.00E-36 | endonuclease V [Dictyoglomus thermophilum H-6-12] |
| trEMBL | tr|I1M9P5|I1M9P5_SOYBN | 3.00E-153 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G16820.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00335 | 79083 | 82572 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000335s00017454.1 | PF04493.9 | Endonuclease_5 | 66 | 286 | 2.00E-59 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.798 |
| SRR1783600 | control | 4.706 |
| SRR1783602 | moderate drought stress | 5.113 |
| SRR1811619 | moderate drought stress | 5.140 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.597 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.636 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.975 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.867 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.939 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.836 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.753 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.577 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.058 |
| SRR2868004 | Drought Stress (root) | 3.700 |
| SRR2967015 | Control (root) | 3.225 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.555 |
| SRR9715740 | Leaf | 7.312 |
| SRR9715741 | Leaf | 6.565 |
| SRR9715739 | Root | 0.465 |
| SRR9715742 | Root | 0.776 |
| SRR9715743 | Root | 1.270 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.119 |
| SRR8749028 | MeJA induced 9h | 0.399 |
| SRR8749029 | MeJA induced 9h | 0.963 |
| SRR8749030 | Uninduced | 0.223 |
| SRR8749031 | Uninduced | 0.085 |
| SRR8749032 | Uninduced | 0.009 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.280 |
| SRR8400027 | Control - Root | 3.434 |