Gene detail information of Glyur000335s00017443 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G17250.1 | 3.00E-41 | CCAAT-binding factor |
| NR | XP_003544990.1 | 1.43E-93 | PREDICTED: nucleolar complex protein 4 homolog [Glycine max] |
| trEMBL | tr|I1MBW8|I1MBW8_SOYBN | 5.00E-94 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G39630.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00335 | 709 | 3447 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000335s00017443.1 | PF03914.12 | CBF | 1 | 100 | 1.30E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 31.908 |
| SRR1783600 | control | 32.181 |
| SRR1783602 | moderate drought stress | 34.675 |
| SRR1811619 | moderate drought stress | 34.107 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 36.583 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 34.660 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 24.198 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 23.109 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 42.695 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 41.237 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 17.055 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 17.683 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 27.943 |
| SRR2868004 | Drought Stress (root) | 31.063 |
| SRR2967015 | Control (root) | 27.522 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 24.508 |
| SRR9715740 | Leaf | 33.350 |
| SRR9715741 | Leaf | 29.574 |
| SRR9715739 | Root | 9.677 |
| SRR9715742 | Root | 26.573 |
| SRR9715743 | Root | 21.878 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 96.571 |
| SRR8749028 | MeJA induced 9h | 37.189 |
| SRR8749029 | MeJA induced 9h | 73.926 |
| SRR8749030 | Uninduced | 16.766 |
| SRR8749031 | Uninduced | 10.555 |
| SRR8749032 | Uninduced | 19.442 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 39.349 |
| SRR8400027 | Control - Root | 34.210 |