Gene detail

Gene detail information of Glyur000334s00019199.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G75330.1	2.00E-130	ornithine carbamoyltransferase
NR	KEH40171.1	0	ornithine carbamoyltransferase [Medicago truncatula]
COG	YP_001997178.1	5.00E-101	ornithine carbamoyltransferase [Chloroherpeton thalassium ATCC 35110]
Swissprot	tr\|Q43814\|OTC_PEA	2.00E-177	Ornithine carbamoyltransferase, chloroplastic (Precursor)
trEMBL	tr\|A0A072VEY9\|A0A072VEY9_MEDTR	0	Ornithine carbamoyltransferase {ECO:0000313\|EMBL:KEH40171.1}

Sequence

Transcript Sequence

>Glyur000334s00019199.1
GTGATAGGGAAAGAAATTAACGAGCGAGTGTTTAAAGGGAAAATATGGCAGCAGTGTCTTGCAACTCCTCATCATTATGCTCCCTCTTTCCTAATTTTTCTCCTCAAATTTCCTTCCAAAGCGCTCCTTTCCCTCGCATTTCCACTTCGCATTTTCCCCTCAAAATCTCATNCCGTGTCTCTTCCGTCGAATCCGCTTCCGTCGCCGCAAAAACCGAGGTGAAACATTTTGTTCACATAAATGATTACGACAAGGACACANCAATGAAGATCATAGAACGGGGCATTGAGGTGAAGGAACTAATAAAATCAGGGGACAGGACATTCCAACCATTTAAAGGGATGACATTGGCCATGATCTTTGCAAAGCCATCACTGAGAACACATGTCTCATTTGAGACTGGCTTTACATTGTTAGGTGGCCATGCTGTTTACTTAGCACCTGAGGATATCCAAATGGGCACCAGAGAGGAGACTCGTGATGTTGCTCGCATCTTGTCTCGATTTACTGACANTGTTATGGCTCGTGTTTTCACTCATGAGGACATACTTACTCTTGCAAAGTATGCAACTGTGCCAGTAATCAATGGTTTGACAGATTACAACCATCCCTGCCAGATAATGGCTGATGCCATCACTATAATTGAGCACCTTGGTCAGCTGGAAGTCTGTAACACACATCAGGTTGCGTATGTTGGGGATGGAAATAATGTTGTCCACTCATGGTTGGAGCTGGCATCTTTGTTTCCCATTCACTTTACCTGTGCGAGTCCAAAGGGTTTTGAGCCTGATGTGAAAACAGTTGAGAAGGCACGCCAAGCTGGATTCAGCAAGATTGAGATAACTAATGATCCCAAAGAGGCCGTCAAAGGAGCTGATATTGTTTATACAGATGTTTGGGCCAGCATGGGGCAGAAGGAAGAGACTGCAAAGCGCCGNTCATTGTTTAAAGGATTTCAGGTGAACCAAGAGCTTATGGATATAGCTGGGTCAAAAGCATTATTCATGCATTGCTTGCCAGCAGAAAAAGGAGTGGAAGTGACAGAGGAAGTAATTGAAGGTCCAAAGTCAATTATCTTCTCGCAAGCTGAGAACCGATTACATGCACAGAATGCCATAATGCTCCATGTGCTTAGCAAGTAACTGATTAGCATGGTGGATGCCTGAATAGTCTTGATCTTGGCAGAGTAGAATAAAACCCGTTTGGTCCAGTTTGACTTTGGTTGTTGGCAATTTGAGCTGAGTCTTTTGACCCAAAAAAAAGGCTGAGTCTATGTTGCAGTCACTGAAGAAACATTGAGTCGTTTGTAAACGCAAGTATTTATTAGTTTCCGTTTTTTTATTATCAGTTGCAGTTGTTATCTATCGGACTCATCTGTGAAGCATGTTTTGGGATCATGTCGTCTGCTTGCATTGTATCATTTAGCGTCAAAAAGTTGAATTGGACCAATTGATGCAGACTGAAATTTAAGAAGAAATTGGTTAATTTGTGTGCGTTGATCACTTCATAATCATGCATAAATTATGAAAGAGTATTTCATCTCATGAAAACATTTTCTCACCTACTAGGCTTCATATCCATTTTGCTGCATTGCTTCTCCTCTTCGAGAATGAGAGTGCTCTGGAACGGGGAAGCCTTGGAGGAATTTTATCCTTCAAGGGGTATTAGGCAAGGGGATCCCATCTCTCCCTATTTGTTTGTCTTGTGTATTGAAAAGCTTTTTCAGATGATTAATGTGGCTATTGATCTTGGTCATTGGCGTCCCATTAAATTATCTCGTGGTGGTCCCCCCATTTCGCATTTAGCCTTTGCNGATGATGTTCTTATTTTTGCTGAAGCTAGTGAGGATCAAGTGGTTCTGATTAAAAGAATTCTTGACCTTTTTTGCAATAGTTCTGGGCAGAAGGTTAGTGATTCAAAGTCCCGCATTTATTTCTCTAAGAATGTTGATGGAGTTGTTAGAAACCATCTTTGTCAGGTTTCGGGGTTCGTGGTAATAGATAATCTTGGCAAGTATCTAGGGGTGCCTATTCTTCATGAGCGGGTTACTAAAAGGTCCTTTAAGTTCATCCTTGATAAGGTTGACCAGCGCCTTAATAATTGGAANGCTAGAACGCTTTCTTTTGNCGGTAGACTCACTCTTACAAAGTCAGTGATTCAAGCCTTGCCAACTTACATTATGCAGTCAGCCTATATTCCTAGACATCTTTGCGATGACATTGATAAAAGATGTAGGAATTTTCTTTGGGGGGACTCAGATGGAGTGAGACATATGCATACGGTTAGTTGGGAAAATATTTGTAGACCCAAGAGATGGGGAGGTCTCGGGTTGAGGACTGCCAGAAGTATTAATCAAGCTTCGTTAATCAAAGCTGGTTGGGATCTTACGGCTAGAAGAGAAGACCTATGNGTTCAGGTTGTTCGTGCAAAATACAAATGTGGGAGAGATATTATTCCCAAAATTGTGCTTGACAAACCTGGTTCCAATTTATGGAGGGGATTGCGGAATGCTTGGGGTGATGTTCATAGCAATCTGGTCTGGAGGATTGGAAAGGGTAATAACATTAACTGCTGGAATGAAAATTGGCTGGCTAATCAAGAAAGTCTAGCTAACAAAGTGTTGAGGCCTTTGTCTGATTGGGAGAGGTCCTTCACTGTTGCTGATCTTCTGGATGAAAATGGAGGGTGGTGTGTTGAAAAGATTTCGCATCTTCTTCCTCATGAAACCCTCTTCCCAAATCCTCTCCATGGCCCCTCCTAACCCGAGCTTGCTGGTGGACAGGGTGGCTTGGAATCTGACCAAAGACGGTGAGTTCTCAACCAAAACTGCCTATGAACATTTACTGGTTCANCCTACTGTTTTTNATTCTAGACTTTTGAAGGTCATCTGGAGTTGGCCCGGCCCTGAAAGAATTAGAATCCTTCTTTGGAAAATTTCCCAAGAGGCTTTGGTTACAAATTTTTTTAGGCAGCATAGAGGGCTTAGTGCCACGGGGTTGTGTCCTGTTTGTAATCAACAAAATGAAACTATTTTGCATATCATGCGTGATTGCACTATGTCCTCTAAAGTGTGGTTGAATGTTGCTAATAGTTCCCTCCATCAGGAATTTTTTAGTTCTACTTTGCAGGATTGGCTTTTTGCCAATTTGATTGATAAAGGCACTTGTGGTGGTATCGAGNGGCGTGTTGTTTTTGGGGCTGTCATAAGCTCCATTTGGCTGGCCAGAAATGAGAAAGCTTTCCATGACAAGAACCACACTATCATGGAGCTTGGCTTAAAAGCTTCCAGGCAAGCTACTGCTTTCCAAATTAGCACTANTGCTCTCCATCGTTTGGGTGATGTGAGATCTAAGGAGGATTGTGCTAATATCCAGTGGAGGGCCCCTGGCGGTGATGTTATTAAAATTAATTGTGATGGTGCTGTGAAAAATCATGGTGATACTGCTGCTTCAGGGGGCGTGTTCAGAAACCAGTGGGGAGGGTTTGTGCTTGGATTTGCCTCTAGATTGGCCCCATCTTNGGTTCTGGTTGCTGAGCTAAGTGCCATCCGGATTGGAATTGAGCTTGCCCAACTGAAGAAGATCAAGAATGTTGAGATTGAATCCGACTCCTTACTGGCAGTGTGGTTGATCAAAGATGGATGCTCTTCAATTCATCCCCTGTACAACACTGTTAGCGAAATTCAAAGGCTTCTCCTTTTGGAAGGAAATTTCTCTATTTCTCATGTTTTTAGAGAAGCAAACCAGCTGGCTGACTGTTTTGCCAAATTTGGTTTGAGTTTAGATTTCTGTAGTAAAGTTTTTTATTGTATTCCTCCCTTTGCTGCTCCCTCTTTGAGGGCGGACATGGTTGGAACTGTTTTTCCTAGGGGTTTTTAGCTGTCTTGTTCTATTTGGTTGGTGGCTTAGCCCCCCAACTGTCATAAAAAAAAAAAAATCCATTTTGCTGCATAAAGCACGAAGATCAAGATCCATTAAAATCAGAGTTGGACATTTTATAAATGAATGCTGATTGATTCACATTTTATATTTTACATTCACTTCATGCTTCTGTCTTTGTTTTTTCTTTTCATTCCATATCCTATGACATCTCTCTCCCCCCTTCCCATCTAAATTTGTTGACTTNTTTCAAATATGCGCTTACTTTTCATTTGAACAATACGCATGAAAGANTGGTCACCACCGAGCGCATTGCAATCAGGCAGCACAGTATACNGAGTACTGTTTACCGTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00334	142296	149720	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00611	OTC, argF, argI	EC:2.1.3.3	Biosynthesis of amino acids	map01230
			Arginine biosynthesis	map00220

Gene Ontology

biological_process

GO:0006520 cellular amino acid metabolic process

GO:0006591 ornithine metabolic process

molecular_function

GO:0004585 ornithine carbamoyltransferase activity

GO:0016597 amino acid binding

GO:0016743 carboxyl- or carbamoyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000334s00019199.1	PF02729.16	OTCace_N	60	202	1.30E-42
Glyur000334s00019199.1	PF00185.19	OTCace	213	361	2.00E-51

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	539.362
SRR1783600	control	539.440
SRR1783602	moderate drought stress	420.907
SRR1811619	moderate drought stress	421.610

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	215.888
DRR006520	Root Summer glycyrrhizin high producing strain	213.568
DRR006521	Root Winter glycyrrhizin high producing strain	0.856
DRR006522	Root Winter glycyrrhizin high producing strain	0.937
DRR006523	Root Summer glycyrrhizin low producing strain	10.507
DRR006524	Root Summer glycyrrhizin low producing strain	10.355
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.213
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.303

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	178.834
SRR2868004	Drought Stress (root)	251.434
SRR2967015	Control (root)	173.746

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.673
SRR9715740	Leaf	0.664
SRR9715741	Leaf	0.479
SRR9715739	Root	304.924
SRR9715742	Root	368.520
SRR9715743	Root	355.069

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.108
SRR8749028	MeJA induced 9h	0.070
SRR8749029	MeJA induced 9h	0.252
SRR8749030	Uninduced	0.119
SRR8749031	Uninduced	0.480
SRR8749032	Uninduced	0.861

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	733.400
SRR8400027	Control - Root	943.046