Gene detail information of Glyur000334s00019194 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G75350.1 | 7.00E-39 | Ribosomal protein L31 |
| NR | AFK38575.1 | 9.98E-69 | unknown [Lotus japonicus] |
| COG | YP_007125341.1 | 8.00E-20 | 50S ribosomal protein L31 [Microcoleus sp. PCC 7113] |
| Swissprot | tr|Q9FWS4|RK31_ARATH | 2.00E-51 | 50S ribosomal protein L31, chloroplastic (Precursor) |
| trEMBL | tr|I3SE83|I3SE83_LOTJA | 4.00E-69 | 50S ribosomal protein L31 {ECO:0000256|RuleBase:RU000564} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00334 | 91598 | 92296 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000334s00019194.1 | PF01197.13 | Ribosomal_L31 | 40 | 104 | 6.60E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 17.499 |
| SRR1783600 | control | 17.406 |
| SRR1783602 | moderate drought stress | 24.922 |
| SRR1811619 | moderate drought stress | 25.039 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 26.468 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 26.734 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 39.940 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 40.026 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 54.814 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 54.465 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 453.287 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 451.079 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 34.634 |
| SRR2868004 | Drought Stress (root) | 42.944 |
| SRR2967015 | Control (root) | 30.718 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 374.192 |
| SRR9715740 | Leaf | 544.672 |
| SRR9715741 | Leaf | 298.071 |
| SRR9715739 | Root | 36.377 |
| SRR9715742 | Root | 21.151 |
| SRR9715743 | Root | 25.418 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 77.541 |
| SRR8749028 | MeJA induced 9h | 29.640 |
| SRR8749029 | MeJA induced 9h | 54.059 |
| SRR8749030 | Uninduced | 13.690 |
| SRR8749031 | Uninduced | 4.515 |
| SRR8749032 | Uninduced | 18.809 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 51.241 |
| SRR8400027 | Control - Root | 46.546 |