Gene detail

Gene detail information of Glyur000334s00019192

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G19640.1	7.00E-101	jasmonic acid carboxyl methyltransferase
NR	XP_003544375.1	0	PREDICTED: jasmonate O-methyltransferase-like [Glycine max]
COG	NP_924885.1	6.00E-21	cyclopropane-fatty-acyl-phospholipid synthase [Gloeobacter violaceus PCC 7421]
Swissprot	tr\|Q9SBK6\|JMT_BRARP	9.00E-130	Jasmonate O-methyltransferase
trEMBL	tr\|I1M8A0\|I1M8A0_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA14G07890.1}

Sequence

Transcript Sequence

>Glyur000334s00019192.1
CCCTTCCTTTTAAGCTAGTTTCCCGAACTGAAGGGAGCATTATTCATCAACTTCTCCTTCATCAAACAAACAGTACTCCATAGCAAAAGAAATGGAAACTGTGGAAGTACTTCACATGAACAAAGGAGTAGGCGAAACTAGCTATGCCATGAACTCCTCCGTTCAGGAGAAGATTATTTCTGTGGCAAACCCAACAACAAAGAGAGCGATCGTGCAAATTCTAAGCACAGCTGGCTCGAGTTGGCCCGAGAGGATGGGCATTGCCGACTTGGGCTGCTCCTCTGGGCCCAATGCNTTGAGGGTCATTTCGGAGATTGTCGATACCGTGAGTGTCACCGCGCGCGTGTTGAATCGCCCAGCGCCAGAGTTGGCGGTGTATTTGAATGACCTCTTCAGCAATGACTTCAACAACATCTTTGCTTTGTTGCCATCTTTCTACANAAAAGTAAGGAGGCAACAAGAAAAGGGAGGAATTGAACATCATGGGTTTGGTGGGTCTTGTTTTGTTTCCGCTGTTCCCGGCACTTTCTACGGNAGGCTCTTCCCAACCAACAGCCTCCACTTTGTGCACTCTTCTTCTAGCCTCCATTGGCTCTCTCAGGCCCCTGCTGGTTTGGAAGATGANAGGGGGAGAGCACTGAACAAGGGAAAGCTCTACATATCAAAGAGCAGTCCCCAGTGTGTGCTAGATGCTTATTCNCAGCAATTCCAAAATGACTTTTCAAAGTTCCTGGAATCACGTTCTCAAGAGATGGTACCTGGGGGACTCATGGTGTTGTCTCTAATGGGAAGGGAATCATTGGACCCCACAACTCCTCATGGCTGCTATCAGTGGGAACTTTTAGCTCATGCCCTCGTGACCATGGTGTCACAGGGTCTTGTTGAAGAAGAAAAGGTGGATTCTTTTGACGCTCCTTACTATGCTCCATGCATAGANGAATTGAAATTAGAGGTTGAAAAGGAAGGGTCATTCATGGTGGATGTGCATGAAGCTTATGAAATCGACTGGGATGGTGGAAATATAATAATGGAATCGCAGAGTGATTCAATGGGGACAATATCAAGTGGAGAACGTGTNGCGAGGACCATAAGGGCTGTGGTTGAGTCCATGTTGGAATCTCATTTTGGGAGTCATATAATGGATGAACTCTTTCGAAGATATGCTGAACTTGTGGAAGATCATTTGTCTAAGACTAGGACNAAATACATCAATTTGGTCATTTCTCTTGTTAAGCGAGGTTGAAATACAAACACAATTTTAAAGATATATCATTAATGAAAAAGTTTGGTGGACACTTGGAGCGAGATAGGGAGATATGAGAGAAAAGTATAATAAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00334	78046	83664	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K08241	E2.1.1.141	EC:2.1.1.141	alpha-Linolenic acid metabolism	map00592

Gene Ontology

molecular_function
GO:0008168 methyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000334s00019192.1	PF03492.10	Methyltransf_7	49	381	1.40E-118

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.760
SRR1783600	control	0.742
SRR1783602	moderate drought stress	0.708
SRR1811619	moderate drought stress	0.736

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.080
DRR006520	Root Summer glycyrrhizin high producing strain	0.160
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.230
DRR006524	Root Summer glycyrrhizin low producing strain	0.229
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.716
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.505

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.243
SRR2868004	Drought Stress (root)	0.096
SRR2967015	Control (root)	0.261

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	21.762
SRR9715740	Leaf	12.357
SRR9715741	Leaf	21.519
SRR9715739	Root	0.000
SRR9715742	Root	0.614
SRR9715743	Root	0.456

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.278
SRR8749028	MeJA induced 9h	0.362
SRR8749029	MeJA induced 9h	0.267
SRR8749030	Uninduced	0.643
SRR8749031	Uninduced	0.232
SRR8749032	Uninduced	0.155

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.375
SRR8400027	Control - Root	0.641