Gene detail

Gene detail information of Glyur000333s00033018

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G23740.1	3.00E-111	Oxidoreductase, zinc-binding dehydrogenase family protein
NR	XP_007140915.1	0	hypothetical protein PHAVU_008G151800g [Phaseolus vulgaris]
COG	YP_003584286.1	3.00E-55	zinc-type alcohol dehydrogenase [Zunongwangia profunda SM-A87]
Swissprot	tr\|Q84V25\|ENOXE_FRAAN	3.00E-160	2-methylene-furan-3-one reductase
trEMBL	tr\|V7B519\|V7B519_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW12909.1}

Sequence

Transcript Sequence

>Glyur000333s00033018.1
CTTGGACACCGCCACACCGAGGTGGCCCCCTTTGCTTTTCCTTTCATTTTAACTTTACCAAAACACGCTATGCACGAGAGAACAATGGAGCTAATATTTTATTATTCCCAAACGGCAACTTTATTATTCACTGCCTAGTGAGTGCTCACTTTTCATCTGATTCCTCCTCTCAGCTCTCACTTCTCTTTCCCATCTACTTTCACTCTTGGACGCAAAATCATTTCCACAAGCAGGTAGCAGAAGCATGGCGGAAATACCGAGTCACATGAAAGNATGGACCTACTCCGAATACGGCAACAGCGTTGATGTTCTCAAGTTTAATCCCAGCGTGCCTTTACCTGAGGTAAAGGAGGATCAGGTGCTCATCAAGGTCGCTGCTGTATCCCTTAATCCCATTGATTACAAGAGAATGGAAGGGTTCTTCAAGGACTCTGACTCTCCTTTACCCACTACACCGGGGTATGATGTTTCAGGAGTTGTGGTAAAGGTGGGGAGCCAAGTGAAGAAATTCAAGGTTGGGGATGAAGTGTACGGTGATATCAACGAGAAGGCATTGGAATATCCAAAGGTGAATGGTTCACTGGCAGAGTATACTGCAGCGGAAGAGAAACTGTTGGCTCACAAGCCGCAAAATCTAAGCTTTGCTGAGGCTGCTAGCCTTCCTTTAACAATTGAGACTGCCTATGTTGGCCTTGAACTAGCTGGCTTCTCTGCTGGCAAATCCATACTTGTGCTCGGAGGTGCTGGTGGTGTTGGAACCCATATTATTCAGCTTGCCAAGCATGTATATGGCGCATCCAAGGTAGCAGCTACATCTAGCACTGGGAAACTGGAATTGTTGAGGAAGTTGGGAGCTGACTTGCCTATTGACTATACAAAGGAGAATTTCGAAGACCTGCCTGAAAAGTTTGATGTGGTGTATGATGCAGTAGGGCAAACTGACAGGGCATTCAAGGCTTTGAAAGAAGGTGGCAAAGTTGTGACAATTGTACCANCAGGATTACCACCATCGATCTTTTTCATACTCACTTCTGATGGTGCTATCTTGGAGAAACTAAGNCCTTACTTGGAGAGTGGCAAGGTGAAGCCAGTACTTGACCCCAAGGGCCCATTTCCATTTTCCCAATCTGTTGAAGCATTTTCCCATCTGGAAACTGGAAGGGCTACTGGGAAANTAGTTATCCATCCCATACCATGAACACAACCATTTTAGTCCCAATTAATACAACCTTTGCACTGCCTATGATTATTTAAAGTTTGCTTTTTAGAGTGAGATATACTTTGGTAAATGTTCTTCAATGGCCTAAAGGTACCAAGTTTGTTTTCAAGTACATAGTTGAATGATAGTGTCTTCCTAGCGTGGTTGCAATGGTGTAATAAATGTACCATAGTTTGTCCATTCTAATTAAACTGCTGCAAGAACTTGCAAATGAGACAATCTTACTTTCGATTTGTATTTTTGGTTTGTGGTTGAAAGCCCGTTATGTAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00333	176204	180577	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0008270 zinc ion binding

GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000333s00033018.1	PF08240.7	ADH_N	37	98	4.70E-12
Glyur000333s00033018.1	PF13602.1	ADH_zinc_N_2	202	313	4.80E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	137.239
SRR1783600	control	138.202
SRR1783602	moderate drought stress	92.605
SRR1811619	moderate drought stress	91.560

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	308.668
DRR006520	Root Summer glycyrrhizin high producing strain	305.167
DRR006521	Root Winter glycyrrhizin high producing strain	555.383
DRR006522	Root Winter glycyrrhizin high producing strain	541.527
DRR006523	Root Summer glycyrrhizin low producing strain	199.124
DRR006524	Root Summer glycyrrhizin low producing strain	199.428
DRR006525	Leaf Summer glycyrrhizin high producing strain	35.456
DRR006526	Leaf Summer glycyrrhizin high producing strain	35.348

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	169.573
SRR2868004	Drought Stress (root)	108.960
SRR2967015	Control (root)	169.647

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	30.337
SRR9715740	Leaf	14.216
SRR9715741	Leaf	27.750
SRR9715739	Root	136.533
SRR9715742	Root	183.210
SRR9715743	Root	174.145

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	37.245
SRR8749028	MeJA induced 9h	41.347
SRR8749029	MeJA induced 9h	25.545
SRR8749030	Uninduced	104.594
SRR8749031	Uninduced	46.216
SRR8749032	Uninduced	70.916

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	292.545
SRR8400027	Control - Root	266.215