Gene detail information of Glyur000333s00033014 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G40300.1 | 1.00E-26 | Uncharacterised protein family (UPF0497) |
| NR | XP_003547725.1 | 7.41E-97 | PREDICTED: CASP-like protein At5g40300-like [Glycine max] |
| Swissprot | tr|Q9FNE8|CSPLV_ARATH | 4.00E-41 | CASP-like protein 4A1 |
| trEMBL | tr|I1MLX0|I1MLX0_SOYBN | 3.00E-97 | CASP-like protein {ECO:0000256|RuleBase:RU361233} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00333 | 126621 | 130838 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000333s00033014.1 | PF04535.7 | DUF588 | 179 | 222 | 3.20E-05 |
| Glyur000333s00033014.1 | PF04535.7 | DUF588 | 228 | 285 | 1.60E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.158 |
| SRR1783600 | control | 9.283 |
| SRR1783602 | moderate drought stress | 15.578 |
| SRR1811619 | moderate drought stress | 15.205 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.643 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 15.791 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 17.962 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 18.157 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 22.060 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 21.372 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.049 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.927 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 17.596 |
| SRR2868004 | Drought Stress (root) | 20.361 |
| SRR2967015 | Control (root) | 21.591 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 11.366 |
| SRR9715740 | Leaf | 19.883 |
| SRR9715741 | Leaf | 10.361 |
| SRR9715739 | Root | 6.372 |
| SRR9715742 | Root | 7.553 |
| SRR9715743 | Root | 8.439 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.240 |
| SRR8749028 | MeJA induced 9h | 9.461 |
| SRR8749029 | MeJA induced 9h | 6.045 |
| SRR8749030 | Uninduced | 3.726 |
| SRR8749031 | Uninduced | 1.737 |
| SRR8749032 | Uninduced | 3.437 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 24.600 |
| SRR8400027 | Control - Root | 20.968 |