Gene detail

Gene detail information of Glyur000332s00014989

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G78060.1	0	Glycosyl hydrolase family protein
NR	XP_003638778.1	0	Xylan 1 4-beta-xylosidase [Medicago truncatula]
COG	YP_004464029.1	1.00E-134	glycoside hydrolase [Mahella australiensis 50-1 BON]
Swissprot	tr\|Q9SGZ5\|BXL7_ARATH	0	Probable beta-D-xylosidase 7 (Precursor)
trEMBL	tr\|G8A378\|G8A378_MEDTR	0	Xylan 1 4-beta-xylosidase {ECO:0000313\|EMBL:AES85916.1}

Sequence

Transcript Sequence

>Glyur000332s00014989.1
CTTGGCTGTGCATTTCCAATTCCATAGAATATCAGATCAGTTTCACACTATGGTCCTCCTCTCATCAGCGACCTTTACCTTTGTCACTACCTTCCTTTTCCTCACTCTCACTCTCACTCTCACTGACACTGACAACCTCGTCCTAGCCCAGCCACCTCCTTTCGCCTGCGATTGGTCGAACCCATCAACNAGATCCTACCCATTCTGCAACCCCAAGCTCCCCGTCACCCAACGAACCAGAGACCTCGTCTCAAGGCTCACATTGGACGAGAAACTCGCCCAACTCGTCAACTCAGCNCCTCCGATTCCCCGACTCGGCATTCCAGGCTACGAGTGGTGGAGCGAGGCACTGCATGGCGTTGGAAGCGTTGGTCGTGGNATCCACTTCAATGGCGCCATCAAATCCGCAACTAGCTTCCCTCAAGTTATNCTCACCGCAGCTACCTTCGACCCCCACCTCTGGTACCGAATCGCTCAGACTATTGGAATTGAGGCGAGAGCAATCTACAATGGTGGACAAGCTACGGGGATGACGTTTTGGGCTCCTAATATTAACATTTTTAGGGACCCAAGATGGGGGAGAGGACAAGAGACAGCTGGTGAAGACCCTTTGATGACTTCTAACTATGCAGTTTCATATGTCAGAGGGATTCAAGGGGATTCCTTTCAGGGAGGGAAATTAAGGGGTCACCTTCAAGCTTCTGCTTGTTGCAAGCATTTCACTGCTTATGATTTGGACAACTGGAAGGGTGTGAATCGCTTCGTCTTCGATGCTCGCGTCACTTTGCAAGATTTAGAGGACACNTATCAGCCTCCATTTAGGAGTTGCGTACAGCAAGGACGATCGAGTGGTATAATGTGTGCTTACAACCGTGTCAATGGGGTACCAAGCTGTGCTGATTACAATCTGTTAACCAAAACCGTCAGAAAACAATGGGAATTTCATGGGTATATCACGTCAGATTGTGGAGCGGTGGGGATCATACATGACGAGCAAGGGTATGCAAAATCAGCAGAGGATGCTGTAGCCGATGTTCTTCGGGCTGGGATGGATTTGGAATGCGGTACTTATTTAACGGACCATGCTAAATCAGCGGTGCTGCAAAACAAGTTACCTATATCTCAAATAGACCGTGCCCTTCACAATCTGTTCTCCATCAGAATAAGGCTAGGCCTATTTGATGGAAACCCAACCAAGCTCCCATTTGGCATGATTGGCCCCAACCATGTGTGTTCCAAAGGGCACCTTTATCTANCTCTTGAAGCTGCAAGAAACGGCATTGTCCTTTTGAAGAACAATGCTGCACTCCTTCCACTTCCAAAGACAAGCCCCAGTAGTACTATTTCCTTAGCAGTGATAGGTCCCAATGCCAATGCCTCCCCGCTAACTCTTCTAGGAAACTATGCNGGCCCTCCTTGTAGATCCATGACTCTACTCCAAGGGTTTCAGCACTATGTTAAGGACACCATTTTCCACCCTGGCTGTGATGGTGGGCCAAAGTGTCCTACCGCTCAAATAGAACAGGCAGTGGAAGTTGCAAAGAAAGTGGACTATGTGGTGCTGGTTATGGGACTGGATCAAAGTGTAGAGAGGGAAGAACGCGATCGCATTCACCTTGACTTGCCGGGCAAGCAACTGGAACTCATCAATAGTGTTGCCGAAGCTTCTAAGCGACCAGTTGTTTTGGTGCTCCTTTGTGGGGGCCCTGTAGATATCAGCTCAGCCAAATATGACAACAAAATTGGAGGAGGAAGACTACCAATTACTTGGTACCCAAAAGATTACATCAAAGTGCCAATGACAGACATGAGGATGCGAGCTGATCCTTCCACCGGCTATCCCGGGAGAACTTATCGATTTTACAAGGGTCCCAAGGTCTATGAATTTGGCTATGGACTAAGCTACACAAAATATTCCCATGAGTTTGTTTCTGTTACNCACGACAAGCTTCACTTCAACCAATCATCCACTCATTTGATGGTTGAGAATTCAGAAACCATCAGGTACAAATTAGTTTCCGAGTTGGGTGAAGAAGCCTGCCAAAGCATGTTGGTGTCAGTCACCGTGGGAGTTAAAAACCATGGAAGCATGGTGGGGAGGCATCCTGTGTTGCTGTTTATGAGACCGGGGAAACAGAGAAGTGGAAGTCCTATGAAACAGTTGGTGGGTTTTCAGAGTGTGTTGCTAGATGCAGGGGAAATGACCCAAGTTGGATTTGAGCTAAGCCCTTGTGAGCATCTCAGTAGAGCAAACGAGGCTGGTTCAAAGGTCATAGAAGAAGGGTCTCATTTGTTGCTTGTGGGTGATGAAGAGTACCCAATAGATATCATTGTCTGATTGATGCTACGGATTTTAGCGTGTGTTTGGCAACTCNTTATTCTCGCGTTCCAATGCAATTTTAGCACAAGCTAAGAAATAGAGCTTCTAATTGGCCGCGCNTTAGAGGAGTGTCAAACGCGAATCCAAGCACACAGTTATTCTATTCCTCAACAACAGGTAAAGCTAATTAGTGAACCTGTTTATGAAACATGATTTACTTTGGGATTATGAGACCATAAAATGTATTATAATGTGATTCCTGGCTCCCATGGCATTAATTCGCATCTGATATTCAGATGAGCGAAGCACTTTTTAAGCATTTTGAATGTAAAAGTTGGTCCTGTTTGATTATTGACCCGGATAAATCCGGTCACCGAATTAAACTGTATGCATCATTTAATAAAATTCTTTTATCCTTTTCCGGTCACCGAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00332	131758	137825	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000332s00014989.1	PF00933.16	Glyco_hydro_3	74	368	2.70E-63
Glyur000332s00014989.1	PF01915.17	Glyco_hydro_3_C	411	559	4.20E-25
Glyur000332s00014989.1	PF14310.1	Fn3-like	687	754	1.00E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	62.452
SRR1783600	control	62.956
SRR1783602	moderate drought stress	40.813
SRR1811619	moderate drought stress	40.500

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	54.530
DRR006520	Root Summer glycyrrhizin high producing strain	54.815
DRR006521	Root Winter glycyrrhizin high producing strain	3.286
DRR006522	Root Winter glycyrrhizin high producing strain	3.130
DRR006523	Root Summer glycyrrhizin low producing strain	40.152
DRR006524	Root Summer glycyrrhizin low producing strain	40.298
DRR006525	Leaf Summer glycyrrhizin high producing strain	25.037
DRR006526	Leaf Summer glycyrrhizin high producing strain	24.750

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	25.922
SRR2868004	Drought Stress (root)	15.219
SRR2967015	Control (root)	25.802

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	17.432
SRR9715740	Leaf	12.530
SRR9715741	Leaf	10.675
SRR9715739	Root	33.683
SRR9715742	Root	30.981
SRR9715743	Root	32.282

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.705
SRR8749028	MeJA induced 9h	0.303
SRR8749029	MeJA induced 9h	0.114
SRR8749030	Uninduced	0.024
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	28.458
SRR8400027	Control - Root	39.451