Gene detail

Gene detail information of Glyur000332s00014976

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G78010.1	0	tRNA modification GTPase, putative
NR	XP_004500604.1	0	PREDICTED: tRNA modification GTPase MnmE-like [Cicer arietinum]
COG	YP_007154978.1	2.00E-144	tRNA modification GTPase trmE [Anabaena cylindrica PCC 7122]
Swissprot	tr\|Q85FG3\|MNME_CYAME	1.00E-76	Probable tRNA modification GTPase MnmE {ECO:0000255\|HAMAP-Rule:MF_00379}
trEMBL	tr\|G8A389\|G8A389_MEDTR	0	tRNA modification GTPase trmE {ECO:0000313\|EMBL:KEH34876.1}

Sequence

Transcript Sequence

>Glyur000332s00014976.1
GAAAAAGCAGAGCGAGAGGAATGGCTATGGCTGCTTTCCGGGCTGCGTTTCGTCACATACACNGTAATAACAACACGTACAACTACTTCTTCTTCACTCCGCCACCACCACCCATGGCCACGGGTTTCCTTTTGAATCGTCGTGCCANGTGGCGGCACCGTCTTTTTTCTTGTCGTGCTAATTACAGTTACAGGGTGGTGGTGAAGAAAGACGAGCGAGTTGTTGACAACAATGGCGATGTTGGGAATTCGAATCCGACAACAATCGCNGCCATTGTAACATCGTTAGGGGGTCCCCCTGCCGCCGTCGGAATCGTTCGGCTCTCGGGTCCTCGCGCGGTGTCTATTGCGGGTCGAGTGTTTCGACCCGCCAGGAACACCTGGCAACCCACCAGCCATGTTGTCGAATACGGCGTCGTCTTGGATTCCGATGGGAATGTCGTCGATGAGGTTTTGGCAGTACCCATGCTAGCACCGAGGTCCTTCACTCGTGAAGATGTGGTTGAACTTCAATGTCACGGGAATGAAGTGTGTCTGCGTCGTGTGCTCAGAACTTGTTTGGAAGCTGGAGCAACACTTGCTCAGCCAGGNGAGTTTACTCTTCGTGCTTTNCTAAATGGTCGTTTGGATCTCTCCCAAGCGGAAAACGTTGCGAGGCTGATCACGGCCAAATCCGTGGCTGCTGCTGATGCAGCACTGGAAGGAATCCAGGCATTGTTTGATGCCCTTCTTCTTGTTACTTTTGACACCTGGATAAGTGATACTGAAAAAAACTGTTGTCTTCTTGGACAGGGTGGTTTCTCTTCTCTTGTCAGATCATTGAGAGTTCAGTGCATTGAGTTGCTCACTGAGATTGAAGCTCGTTTGGATTTTGAAGATGAGATGCCACCTCTAGATTTGAATCGCATTATGGATAAAATACATGACATGTCACGGGATGTTGAGAATGCATTGGAAACAGCAAATTATGATAAGCTTCTGCAATCTGGATTACAGATAGCAATTGTTGGCCGTCCAAATGTTGGCAAGTCAAGCCTTCTTAATGCATGGAGCAAAAGTGAGAGGGCAATAGTTACGGAAGTTGCTGGAACCACTCGTGATGTGATTGAAGCAAGTATCAGCATCAATGGCGTCCCCATAACCCTTCTTGATACTGCAGGCATCAGGGACACTGATGACATTGTGGAAAAGATTGGTGTAGAGCGATCTGAAGCAGTTGCTCGGGGTGCTGATTTGATTATCATGACTGTGAGTGCTGTTGAAGGGTGGACTTCTGAAGACACCAATCTTCTTGAAAGGATTCAATCCGCTAAGGGGTCAACTAGATCTTCCACCCCAGTCATCCTTGTGGTCAACAAGATAGATTGTGAACCTTGTGCTGAGACTGAATGGGACAACGGATGCCACCATCACAANTTTTTCAGCAAACGTGTGTTTACATGTGCTGTGACCGGTCAAGGATTACAAGACTTAGAGAGGGCAGTTTTAGAAATTGTAGGTCTGGATGGCATTCATGCTGGGGGTCGCAGATGGACTGTAAATCAGAGACAATGTGAACAACTTGTTCGGACCAAGGAAGCACTTACAAGGTTACAATCATCAATAAAGGAGGAATTACCTTTAGATTTTTGGACAATTGATTTGAGGGATGCTGCATTGTCCCTTGGACAGATAAGTGGAGAAGATATATCGGAGGAGGTTTTATCAAATATATTTGGCAAGTTCTGTATTGGTAAATAATAGAAAGCTCCATATATGTGCTTGGTGATTTTTCTTTCCCAGACATATAAACGACGCTAAATTCTATCTGGGTGCATGGATTTAATTTTTAACTAGTATGCTTATAAAATACTCTCTCCAGATTCAAATATAAGAAAAAAATAACTCAAGTGTGGAGGTTCAAAATATAAGCAAATATTAATTGATTTCACTATATTTATTGATTTTTTCTACAAAATACTCTTATATTAATACAAATTTCAATTTCAATGGCAAGGGATGATTCNATAGTCGATTGCACAAATAAAATGGGGACATTTACATGGCCATGCCATGAGTGTATAGGCAGAGCACAGGAACATTTATTGTCTTCTAACCAAGTACCTGGCGAAGTTCATCGGTAACCTCACGGCTTGATGCTTTCAACTGCAAGAGAATTCAAAGAATCATTTCCATGTTTCAAGATATGACGAAGCAAATGGTAAACATTAAACAGTTAATGCAACCAAATAATAACAAGAGTGTGTTTTACCTTGCTTAAAAGGGTGGCAAGACGTTGAGGTAGAGCTTGCAAATCTAGAATTGAGTCACCAACATTTGTCAAATGAAGCAACAGTTTCTGGAGACGCAATTCCTTTAGTTTGTCCTCGTAATTTGCGGGATCATCCTTCCATCTAAAGAAGGCTTCATCATCCAACCAAGCGTNTTCTCTACCTTTGGCAATATCGGAACTCAAATACCAGTTTTTGAGCAAGTTCATGGCAGATGTGTGTGACAAATGGTCACCAGCAGCCTCTCTCACACTGTTGATCAGTGACTCCTCACCAATTCTCCTGTGCAGTCGCCGGTAGAAGACTGGACGGGAGTTACCCCAGTCCACAACTTCTCTGATTGCCCCCTTTGCAGCCATTCTTAACGAAGTACCATGCAGTTCAGCAAATTTGGTAGCAATCTGAGTATACAGAGGCAAAAGTTGTTTCTCACGGGATTTAATCTGCTGCTGCAGGGACTCAACTGTGCCAAGGTCCTTGTTACTCTTGGCTTCCTGGAGTTTTGCCTTCAGAGTCATCAACTTTTGATCAAGTCTGCCCATGCACTCCAACAATTCTTTTGCTCTGAATTTGATCTCAATCATTCCTTCTGGCTCAAGGACATTACCCTTAGCTGTTCGCTCGGCATACATTTCAATGTGGTCTGAATTGATTCGACTGTTAACAACAGCCCATGCCCCGCCACGGAGTTCACCCATCATNGGGATGTATACAAATACGAGCTGGTTGTATGTTCTAAGGTTCTCCACAATAGTTGAACCAGCCTGAAGAATTCCTTCAAAAAGGTCCCTTTGCCCACCTGAAAAGCCTCTCCAGTTTGCAAGAATGAAAAGTGGGAGTTCCTCTCTGTTGAAATCCNATATCGCTTGGGCTGTCTTGGTCGCAGAATCAGGAAACCACACTTGCCCAGCCTGAGGAACAACCCTCTCATGAGAATCAAGCTGGCCTGGATCAGCAGGTATTATTTGCATAACTGTNTGTGTTTCCACCGCAACAACTCCCACAGGGATTCCTCCAAGCTTTGCCCTTCCTGTAACAACTGTCCTTGCCCATCCTTCTANTGTCTCTACAAAGCTGTCCTTGTCNAAAATGCCACCNAACCATCTTCCATTTCCATCCAGAGTTCCACTAATGGCAGCACGAGGATCACACGAGTTTTCAGGTAAATACTCCACTGGTCTTTCTGGAGGATCAAGGGGCTTTACAATAGGAAGTGCACCACCTACATGAGCCGGAATGTAGCTAAGCCACTTCAAAATAGAAGAAACACCTTCAAGGTCATCAGAAACTGTTAGATGAACAACTCCATTAGTTGCCATGATTTTAGGTCCACCAAGTTGCATGTGAGAGCTGTATACCTCCCGACCAAGAAGTTTGTTCAATGCTGTAAAGCCAGTAAGAATTATGGGGTGATCAAGCCTCTGTATGCATCTCATCCCAAGCCTAGCAAGATAAGCCCCTATTCCAACAGTCCTACCAGTCACATATGTCAATGTAAAAGTTTCCTTGTATGCCCTTGAATAGGCACTAGCAATGGCCGCAACGCCACCGGCGTTTTCAATCCCCAGGCCATCCTCCTTGCCAACAATGGTATCTATAACCCATCTGGTTTCTCCACTTTCAAGCTTTAATTCATGTGCTATCACTGATGATCCAATTCGACCATAATCCTCAGGTGTTAAATATACATACTGAAAACCATGCTCAGGGTTAGATTCCTCAGACCAACCAACTCTGAAACAAGCTTTGACTTCCTTGGCTAAACCAAAAAAGCCACCAGAATTTGCCGCTAAATAAATTAAAGGTATTTTCTTTGCACAAGCAAGATCAGTTACTGCATGAAAGAATGCATTCTCTCTAGGGCTAAAAGAACCAGCCCTGAAGGTCACATCATTTGCAACAATCAATATTGTCCTTCCAGATGGGAACTCAGGGGTACACATTTCCATAAACCAGGCTACCATGCCAACATCATTGAGTCCAGGAGGACGCTCCACAGGAACAAGAGGAGTACCCCAGCTACCTTCTTTGTCAGCAAATATAAGCTCCGTTACTTTTAGGAGATCTTTACCTTTGGCTCTTTGAATTCCTGGCTGTTGGATTGCCCATGACTGTTCCAAGGCTGTTTCAAACGCCTGCAACATGCATTTATCCTCAGGAAACATAGCTTGGCTTGTCTTGTCATCCACTCATTAAAAGGAAATGGTACACAACTACACATACACAAATACACATACATGCCCACACAAACAGACACAGACAAAAGAAACCTATCAAATTAAATATCACTTACCAGGGGAAAATCGTAGCAGTATGTGGTGCTGTTCTTTCTTGCTGAAAGACGTTTTTGATCAATAACACCCAAGGGTTGATAGTTTTCGTTCACTGGTACACCATGCAGTGGTCCCTTTACAGTGACTGAGCTGTATACCACTTTGTGAGTAGTGGCATCCTCCATTTCTCGATATAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00332	43245	50089	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006400 tRNA modification

cellular_component
GO:0005622 intracellular

molecular_function

GO:0003924 GTPase activity

GO:0005515 protein binding

GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000332s00014976.1	PF10396.4	TrmE_N	81	201	4.80E-36
Glyur000332s00014976.1	PF01926.18	MMR_HSR1	325	446	8.20E-23
Glyur000332s00014976.1	PF12631.2	GTPase_Cys_C	503	569	2.50E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	49.871
SRR1783600	control	51.767
SRR1783602	moderate drought stress	39.201
SRR1811619	moderate drought stress	39.484

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	37.108
DRR006520	Root Summer glycyrrhizin high producing strain	37.087
DRR006521	Root Winter glycyrrhizin high producing strain	13.568
DRR006522	Root Winter glycyrrhizin high producing strain	13.064
DRR006523	Root Summer glycyrrhizin low producing strain	23.812
DRR006524	Root Summer glycyrrhizin low producing strain	22.662
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.577
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.017

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	209.177
SRR2868004	Drought Stress (root)	143.073
SRR2967015	Control (root)	111.934

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	20.247
SRR9715740	Leaf	18.434
SRR9715741	Leaf	19.595
SRR9715739	Root	15.881
SRR9715742	Root	69.268
SRR9715743	Root	63.242

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.905
SRR8749028	MeJA induced 9h	7.777
SRR8749029	MeJA induced 9h	3.947
SRR8749030	Uninduced	9.414
SRR8749031	Uninduced	3.780
SRR8749032	Uninduced	8.399

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	83.309
SRR8400027	Control - Root	78.084