Gene detail

Gene detail information of Glyur000332s00014974

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G10180.1	0	slufate transporter 2;1
NR	KEH34870.1	0	sulfate/bicarbonate/oxalate exchanger and transporter sat-1 [Medicago truncatula]
COG	YP_005320855.1	2.00E-86	sulfate transporter [Saprospira grandis str. Lewin]
Swissprot	tr\|P53393\|SUT3_STYHA	0	Low affinity sulfate transporter 3
trEMBL	tr\|A0A072V9P8\|A0A072V9P8_MEDTR	0	Sulfate/bicarbonate/oxalate exchanger and transporter sat-1 {ECO:0000313\|EMBL:KEH34870.1}

Sequence

Transcript Sequence

>Glyur000332s00014974.1
ATCAAAGAGTGGGGAAAAGGCAATAATAAGGTAGGCATATATGTAAGGGGGGGAGGGGGAATTTATACCCATGGTCAGACATTCCCAACTTTNAAGAGATTAGCCAATCTAAGCTGTGCCACAAGCATCCCTCTCAGTCACAGGCTTAATTCTAAGGAAGCTAATTCTGCATCCCCTTTCAAGAAATCATCCAAACAAATTGACCCATCATGCCAAAATACTACTAGTTGTGTGTGTGTCACTGAACTGACATGAAAACAAACACACATTAAGTAGTACTGCTTGAAAGAGTTCACCCAAACACTTCAAAAATAAAATAANAAACATAAGTTATGAGAGATAGAGAGCAGGGACAGGATAGTGATCAAACAGAGAGGTCACAGTGGGTACTGAGTCCTCCCAACCCACCTCCTCTATGGAAGAAGCTAATTACTCCACTCAAGAACAAGTTGTTCTTTGTTTCATCCAACAAGAAGAAAACTTGTCATGGCCATGCTGTTTCATTCTTGCAGAGCTTATTCCCAATCCTTAGCTGGTTCAGAAATTATGATGCCTTTAAGTTCAAAGATGATTTGCTAGCAGGTTTAACTCTTGCCAGCCTTAGCATACCTCAGAGTATAGGATATGCTAATTTGGCAAGACTTGATCCTCAATATGGCCTGTACACCAGTGTGGTTCCTCCTCTGATCTATGCTGTGATGGGGAGCTCAAGAGAAATTGCAATTGGACCGGTAGCTGTAGTGTCACTTCTGCTATCCTCCCTGGTTCCGAAAGTGGTTGATCCTGATGCAAACCCTGATGCCTACAGAAATCTTGTCTTCACCGTGACCTTGTTTGCTGGCATCTTTCAAGTTGCATTCGGAGTTTTCAGGTTGGGCTTTCTCGTGGATTTTCTTTCACATGCTGCCCTTGTGGGATTCATGGCAGGCGCAGCCATCATTATTGGTCTTCAGCAGCTCAAGGGGCTGCTTGGGATTAGTCACTTCACCACCAAAGCTGATGTTGTGTCGGTTGTGGAATCTGTTTATAAGTCACTCCATCAACAGATTACATCAGGAGAAGGCAAACGAAACAAGAAGCTTTTCTGGTTGCCTGCTATTGCTCCTCTTGTATCAGTTATATTATCAACTTTTATTGTGTATATATCGAGAGCTGATAAGAACGGGGTTAATATAGTGAAGCATGTCAAGAAGGGTGTGAATCCAAGCTCGGCTCACCAGTTACAACTCCATGGTCCACTTGTTGGACAAGCAGCTAAAATTGGATTGATTTCTGCCGCTATTGCTCTAACTGAAGCAATCGCTGTTGGTAGATCTTTTGCTTCTATTAAGGGATACCATCTTGATGGGAACAAAGAAATGTTGGCAATGGGCTGTATGAACATTGCAGGATCTTTCACTTCATGCTATGTGGCAACTGGATCTTTCTCGAGGACTGCAGTGAATTTCAGTGCAGGGTGTCAAACATCAGTGTCAAATATTGTGATGGCAATAACGGTGCTGCTGTGCCTGGAATTGTTTACGAGGCTCTTGTACTACACTCCAATGGCCATACTTGCTTCTATTATCCTCTCTGCTCTACCAGGATTAATTGACATAAGAGAGGCTTGTTATATCTGGAAGGTTGACAAGTTGGACTTTCTTGCCTGCATTGGTGCTTTCTTCGGCGTCTTGTTTGAATCGGTAGAAATTGGTCTTCTTGTGGCAGTGTCAATCTCATTTGCAAAGATACTAATACAATCAATTCGGCCAGGGATAGAAGTTCTAGGTCAAATCCCAAGAACAGAAGCCTTCTGCGATGTTGGTCAATATCCCATGTCCATAAGCACACCAGGCATCTTGGTCATTCGCATAAGCTCTGGCTCACTCTGCTTTGCAAATGCCAATGTTGTTAGAGAAAGGCACGCACCTCCAAGATTATTTATTTGTAGATGGGTCACCGAGGAAGACGAGCTTAAAGAAACTACTGCCAAGGGAAGGGTCCAAGCAGTAATCTTAGACATGACCAACCTTATGAATGTTGATACGTCCGGAATTTTAACATTGGAGGAACTGCACAAGAGGTTGCTTTCGCGTGGCGTACAATTGGCTATGGTCAACCCGAGGTGGCTAGTAATTCACAAGCTTAAAGTAGCGCACTTTGTGGATAAAATTGGAAGAGAATGGGTATTCCTTACAGTTGCTGAAGCCGTGGATGCATGCCTGTCTTCTAAATTCGCTGACCCATGATTACACGGGGCCTTCTCTGTATTGTAATATTATATATTATATTATACGGTGCATAATTTCATATCTAGGTCCACACATAAGTCAATGCCTACATAAGATGTAATGACATATTCATGTACACCTAGGATTGTGGAATTCTGTCCCTGTTTGGAAAGCATCGTGTGAGAGTATTATGTTACGNAAAATCTCCTTCCACATACTATACACATTTGCCTGTGCAGTGCAGGACTCACATTCAAATATAAATAAGCCTTTTGTTTGGTATTCCTCAGCCAAGAAAAAATGAAAAAAGTGCAAGAAAAATAGAAATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00332	17188	23297	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0008272 sulfate transport

GO:0055085 transmembrane transport

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function

GO:0008271 secondary active sulfate transmembrane transporter activity

GO:0015116 sulfate transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000332s00014974.1	PF13792.1	Sulfate_tra_GLY	63	144	5.90E-32
Glyur000332s00014974.1	PF00916.15	Sulfate_transp	176	437	1.80E-92
Glyur000332s00014974.1	PF01740.16	STAS	493	619	1.10E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.857
SRR1783600	control	3.959
SRR1783602	moderate drought stress	6.887
SRR1811619	moderate drought stress	6.787

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.958
DRR006520	Root Summer glycyrrhizin high producing strain	9.635
DRR006521	Root Winter glycyrrhizin high producing strain	0.439
DRR006522	Root Winter glycyrrhizin high producing strain	0.393
DRR006523	Root Summer glycyrrhizin low producing strain	8.524
DRR006524	Root Summer glycyrrhizin low producing strain	8.588
DRR006525	Leaf Summer glycyrrhizin high producing strain	25.964
DRR006526	Leaf Summer glycyrrhizin high producing strain	26.005

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.844
SRR2868004	Drought Stress (root)	38.062
SRR2967015	Control (root)	37.814

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	107.342
SRR9715740	Leaf	123.920
SRR9715741	Leaf	162.830
SRR9715739	Root	2.684
SRR9715742	Root	13.076
SRR9715743	Root	12.369

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.556
SRR8749029	MeJA induced 9h	0.024
SRR8749030	Uninduced	2.264
SRR8749031	Uninduced	0.030
SRR8749032	Uninduced	0.176

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.170
SRR8400027	Control - Root	15.514