Gene detail information of Glyur000331s00020728 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G77360.1 | 0 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| NR | XP_004502524.1 | 0 | PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q9FVX2|PP129_ARATH | 0 | Pentatricopeptide repeat-containing protein At1g77360, mitochondrial (Precursor) |
| trEMBL | tr|A0A072VAZ0|A0A072VAZ0_MEDTR | 0 | PPR containing plant-like protein {ECO:0000313|EMBL:KEH35335.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00331 | 184730 | 192757 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000331s00020728.1 | PF01535.15 | PPR | 220 | 247 | 0.24 |
| Glyur000331s00020728.1 | PF13041.1 | PPR_2 | 252 | 297 | 5.80E-08 |
| Glyur000331s00020728.1 | PF12854.2 | PPR_1 | 317 | 348 | 4.20E-14 |
| Glyur000331s00020728.1 | PF01535.15 | PPR | 359 | 388 | 0.0011 |
| Glyur000331s00020728.1 | PF13041.1 | PPR_2 | 391 | 437 | 8.20E-12 |
| Glyur000331s00020728.1 | PF13041.1 | PPR_2 | 463 | 507 | 1.20E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.092 |
| SRR1783600 | control | 9.149 |
| SRR1783602 | moderate drought stress | 10.307 |
| SRR1811619 | moderate drought stress | 10.105 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.446 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.714 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.007 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.943 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.945 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.077 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.980 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.998 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 18.298 |
| SRR2868004 | Drought Stress (root) | 20.588 |
| SRR2967015 | Control (root) | 23.796 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.858 |
| SRR9715740 | Leaf | 8.543 |
| SRR9715741 | Leaf | 10.018 |
| SRR9715739 | Root | 3.020 |
| SRR9715742 | Root | 8.814 |
| SRR9715743 | Root | 6.944 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.449 |
| SRR8749028 | MeJA induced 9h | 13.479 |
| SRR8749029 | MeJA induced 9h | 6.815 |
| SRR8749030 | Uninduced | 3.694 |
| SRR8749031 | Uninduced | 4.388 |
| SRR8749032 | Uninduced | 2.679 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 23.865 |
| SRR8400027 | Control - Root | 21.363 |