Gene detail

Gene detail information of Glyur000331s00020724

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G21650.2	Preprotein translocase SecA family protein
NR	XP_004502527.1	PREDICTED: protein translocase subunit SECA2, chloroplastic-like [Cicer arietinum]
COG	YP_007081971.1	Preprotein translocase subunit SecA [Pleurocapsa sp. PCC 7327]
Swissprot	tr\|D8WUA4\|SECA2_ARATH	Protein translocase subunit SECA2, chloroplastic (Precursor)
trEMBL	tr\|V7AXX5\|V7AXX5_PHAVU	Protein translocase subunit SecA {ECO:0000256\|RuleBase:RU003874}

Sequence

Transcript Sequence

>Glyur000331s00020724.1
ACTGCAAGAATAAACTCTATTCCACACTCCACACTCCACACTGCACAGCACACACACACACACACAGCAGTGACAACACCATCGTATTCGCATGCCAAACTCAATTCTAGTTGGAAGCACAACCACACAGGCTCCTTTTATGGCCACGCTNTCATACACACCCTTCTTCGCCATTCAAAGAACAACTTCAACCAACGCCAACAATGCCTTCTTCATTCGAACGCGTCCTTTTTCCGTTATTCCTCCTTTCCCTCGCTTGCGACGACGTCGTTCCGCGCCCGTTTTCGTCGCCGTCGCGTCCGTTAAGGAAAATCTTGGTCGCATTCGAAAGGGTTTCAGTGACTTCACGAGCTTGAACCACTGGGTTGTTCGCGACTACTACCGTCTGGTTAACGCCGTCAATTCATTCGAGCCTCGGATTCAGGCGCTCTCNGATGAACAATTGGCCGCGAAGACACCGGAGTTTCGCCTCCGGCTTGCGCGAGGGGAGACCCTTGCGGATATCCAAGCTGAGGCGTTCGCTGTTGTTCGTGAGGCTGCCAGAAGAAAACTTGGAATGCGCCATTTTGATGTTCAGATTATCGGTGGAGCGGTGTTGCATGATGGGTCCATTGCTGAGATGAAAACAGGTGAGGGGAAAACCTTAGTTTCCACACTAGCGGCGTATCTTAATGCCCTGACTGCCGAGGGTGTCCATGTTGTAACTGTCAACGATTATTTAGCCCAACGTGATGCTGAATGGATGGGGCGTGTTCATCGTTTCTTAGGTCTTTCCGTTGGTCTTATCCAGAGGGGGATGGGTGCTGAAGAACGGAGATTCAACTATAGATGTGATATAACATATACCAATAATTCGGAGCTTGGCTTTGATTACTTGCGAGATAATCTTGCTGGAAATAGTGAACAGCTTGTGATGAGATGGCCAAAGCCATTTCATTTTGCAATTGTTGATGAGGTGGATTCTGTCCTGATAGATGAGGGGAGAAATCCGTTGTTAATCAGTGGTGAGGCTAGTAAAGATGCTGCACGATACCCTGTTGCTGCAAAAGTGGCCGAACTGCTTACACAGGGCATTCATTACAAAGTGGAGCTTAAAAATAATTCGGTGGAGTTGACTGAGGAAGGAATTGCTCTTGCTGAAATGGCTCTTGAAACTAATGACCTTTGGGATGAAAATGATCCCTGGGCTAGATTTGTGATGAATGCTTTAAAAGCTAAAGAATTCTATCGCCGAGATGTGCAATACATGGTCAGAGATGGAAAGGCTTTAATTATCAATGAGCTGACAGGAAGAGTTGAAGAGAAAAGGAGATGGTCTGAGGGGATTCACCAGGCTGTGGAGGCAAAGGAAGGTTTGAAGATTCAGGCAGATTCTGTTGTCGTGGCACAGATCACATACCAGTCATTATTCAAGCTTTATCCAAAATTGTCAGGGATGACTGGAACTGCAAAAACCGAAGAGAAAGAGTTCTTAAAAATGTTCCAGATGCCAGTCATTGAAGTGCCCACAAATCTTCCTAATATTCGCAAAGATTTGCCTATTCAAGCATTTGCTACTGCTCGTGGGAAATGGGAGCAAGTTCGCCGAGAAGTTGAATATATGTTTAGACAAGGCCGTCCTGTCTTGGTTGGGACAACTAGTGTAGAAAATTCAGAACTTTTGGCTGGTCTGCTTAGGGAGTGGAATATTCCCCATAATGTTCTGAATGCTCGACCCAAGTATGCTGCAAGAGAAGCTGAAATTGTTGCACAGGCAGGACGAAAACATGCCATTACCATCTCTACAAACATGGCAGGCAGGGGCACAGATATAATCCTTGGAGGAAATCCAAAAATGCTTGCTAGAGAAATTATAGAGGATAGTGTACTTCCATTTTTGACGCGGGAGGATCCAAATCTTGAACTAGCTGGTGAGGCCATTTCACAAAAGGTGCTTCCAAAGATAAAGGTTGGGTCGTCTTCATTAGCCCTACTGGCTAAGACAGCATTAATGGCCAAATATGTATCCAAAAGTGAGGGTAAAAGTTGGACATATCAGAAGGCCAAATCTTTTATCTTGGAGGCTGTTGAAATGAGTCTTTCATATAGTTTGAAAGAGCTGGAGAAGCTTGCTAATGAAGAGTCTGAGATCTACCCTCTTGGTCCAACTGTAGCACTTGCCTATCTGTCAGTTTTGAAGGATTGTGAAGAACACTGTTTGCATGAAGGGTCCGAGGTAAAAAGGCTTGGGGGCCTTCACGTGATTGGTACATCTTTACATGAGTCCCGGAGAATAGACAACCAGCTTCGTGGCAGATCAGGAAGGCAGGGGGATCCAGGATCAACACGATTTATGGTCAGCTTGCAGGATGAGATGTTTCAAAAGTTCAATTTTGATACTGAATGGGCAGTGAGACTTATCTCAAAGATTACAAACGATGAGGATCTGCCAATCGAGGGTGATGCCATTGTAAAACAGCTATTGGCATTGCAAATCAATGCGGAAAAGTTCTTCTTTGGTATACGAAAGAATCTCGTTGAGTTTGATGAAGTATTGGAGATTAATTCAACTAAGCAAAACTCTGAGTACTTTGTAGAACGAAAGGTGCAACGAAAGCATGTTTATGATCTAAGGCAGATAATCTTAACAGGAGATGATGAAAGCTGTTCCCAACACATATTCCAGTACATGCAAGCAGTGGTGGATGAGATTGTCTTCAGTAACATTGATCCATTGAAGCATCCACATAGCTGGGATTTGAGTAATCTCTTGAAAGAGTTCATGACAATTGGGGGAAAGCTGTTGCATGAATCATTTGGAGGGACTAGGGATGACACTTTGTTAAATTCACTTAGGCAACTGAATGACGTGAGTTCAGTTGATATTGTCAATTTTTCCCTTCCAAATTTGCCAGCACCTCCAAACGCTTTCAGGGGAATTCGCAGGAAGAGCTCTTCATTAAGACGATGGCTTGCTATTTGCACTGATGATTTAATTGCGAATGGGAAGTATCGGACAACTTCTAATCTCCTTCGCAAGTATCTTGGAGATTTTCTAATTGCTTCATATTTAAATGTTGTCGAGGAGTCTGGTTATGATGAGAGACATGTAAAGGAAATTGAGAGAGCTGTTCTTTTGAAAACTCTTGATTGTTTCTGGAGAGATCATCTTGTAAACATGAACAGGCTCAGCTCTGCGGTGAATGTTAGGAGCTTCGGCCATAGAAATCCTCTGGAAGAGTATAAGATTGATGGTTGTCGATTTTTCATCTCAATGCTCAGTGCAACTCGAAGGTTGACTGTGGAAGCACTCTTACGGCATTGGACATCTCCAATGGAATCCCAAGAACTATTCTTATAATAAACGTTAGAACGCTTCTTACATTAAAGGCAGATAATTCCCGCAAAAGAATTTCCAACTTTAGACCGGAATTTTATTCTCTTTAACACCCCCACCCCACACAAGGACTAGTATGAAGGCAAATTCTNCAAGGCCATTAGTCAATTGGTTTAGGTGTAGATATCAGAAAAGGGGGTCTGTAGAATGGTTTTAGGACTCAGAATTACTCCATCTCCCAGTAATGTTATCCCCTTTTTCTAGTTTGTCAAAGTTACATGGAGATGCTCACAAAAATTATTGGCTATCATATGTACATCCTGTTACAGGTAACGTGTGACAAAATTTGTTTGTCTAGTTTTCTCTCTCTCTCTCTCTATTACAGGGCAATCAAAGGTGCACATCCTATTTATTCTGGTGCTTTTGGTTAGATTATATACATGATTTTTGTTGATTAATTGAACTGGGGTTCACATGTTGAGGGTGCTTAGTGCCTAGAAGATGTTTAGAGAGAGTTATGCCAAACACATCTAAGCAAACGTCCTTTCTTTCCTTTGTTCTACTGAAAAAATAAGAAGCCAATTTAAATGTGTATAATCTAGTACAATAAGTTAACAACATCGTGGGAATTGGTCTGTTAAGGCATTTAAGGTTCATAATGAAAGTCATGTTTCTCATGCTTGAATGTAATTTTT

Protein Sequence

>Glyur000331s00020724.1
MPNSILVGSTTTQAPFMATLSYTPFFAIQRTTSTNANNAFFIRTRPFSVIPPFPRLRRRRSAPVFVAVASVKENLGRIRKGFSDFTSLNHWVVRDYYRLVNAVNSFEPRIQALSDEQLAAKTPEFRLRLARGETLADIQAEAFAVVREAARRKLGMRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTAEGVHVVTVNDYLAQRDAEWMGRVHRFLGLSVGLIQRGMGAEERRFNYRCDITYTNNSELGFDYLRDNLAGNSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDAARYPVAAKVAELLTQGIHYKVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYMVRDGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRKDLPIQAFATARGKWEQVRREVEYMFRQGRPVLVGTTSVENSELLAGLLREWNIPHNVLNARPKYAAREAEIVAQAGRKHAITISTNMAGRGTDIILGGNPKMLAREIIEDSVLPFLTREDPNLELAGEAISQKVLPKIKVGSSSLALLAKTALMAKYVSKSEGKSWTYQKAKSFILEAVEMSLSYSLKELEKLANEESEIYPLGPTVALAYLSVLKDCEEHCLHEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRSGRQGDPGSTRFMVSLQDEMFQKFNFDTEWAVRLISKITNDEDLPIEGDAIVKQLLALQINAEKFFFGIRKNLVEFDEVLEINSTKQNSEYFVERKVQRKHVYDLRQIILTGDDESCSQHIFQYMQAVVDEIVFSNIDPLKHPHSWDLSNLLKEFMTIGGKLLHESFGGTRDDTLLNSLRQLNDVSSVDIVNFSLPNLPAPPNAFRGIRRKSSSLRRWLAICTDDLIANGKYRTTSNLLRKYLGDFLIASYLNVVEESGYDERHVKEIERAVLLKTLDCFWRDHLVNMNRLSSAVNVRSFGHRNPLEEYKIDGCRFFISMLSATRRLTVEALLRHWTSPMESQELFL

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00331	145437	161823	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006605 protein targeting

GO:0006886 intracellular protein transport

GO:0017038 protein import

cellular_component
GO:0016020 membrane

molecular_function
GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000331s00020724.1	PF07517.9	SecA_DEAD	90	460	1.00E-107
Glyur000331s00020724.1	PF01043.15	SecA_PP_bind	309	417	2.80E-30
Glyur000331s00020724.1	PF07516.8	SecA_SW	780	1071	5.30E-49

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.376
SRR1783600	control	4.445
SRR1783602	moderate drought stress	6.019
SRR1811619	moderate drought stress	5.999

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.116
DRR006520	Root Summer glycyrrhizin high producing strain	8.022
DRR006521	Root Winter glycyrrhizin high producing strain	5.542
DRR006522	Root Winter glycyrrhizin high producing strain	5.260
DRR006523	Root Summer glycyrrhizin low producing strain	4.899
DRR006524	Root Summer glycyrrhizin low producing strain	4.393
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.509
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.152

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.656
SRR2868004	Drought Stress (root)	11.943
SRR2967015	Control (root)	12.982

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.405
SRR9715740	Leaf	12.685
SRR9715741	Leaf	8.205
SRR9715739	Root	1.121
SRR9715742	Root	5.212
SRR9715743	Root	4.510

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.886
SRR8749028	MeJA induced 9h	5.189
SRR8749029	MeJA induced 9h	4.670
SRR8749030	Uninduced	1.578
SRR8749031	Uninduced	1.218
SRR8749032	Uninduced	1.381

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.590
SRR8400027	Control - Root	13.556