Gene detail

Gene detail information of Glyur000330s00019526

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G01410.2	3.00E-72	Polynucleotidyl transferase, ribonuclease H-like superfamily protein
NR	KHN13287.1	2.24E-164	Hypothetical protein glysoja_016464 [Glycine soja]
COG	YP_007035168.1	1.00E-27	hypothetical protein BN6_09660 [Saccharothrix espanaensis DSM 44229]
trEMBL	tr\|K7LXC0\|K7LXC0_SOYBN	4.00E-164	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G04491.2}

Sequence

Transcript Sequence

>Glyur000330s00019526.1
CAGAGTTGCTTTTTAGTTTTCTTCATCACCCTCCTTCCATCTCCACATCAAACACATAATAAAGTTCGAAACTTTGACTGAGAAAAAGTGATTCTGTAACTGGGATTGTGCACTGTTGTTGTTGCAATGGCTGAGGAGAAGGATGCTTTCTACGTTGTAAAGAAGGGTGATGTCGTTGGCATCTACAAGTCTTTCACTGACATCCAACCTCTACTTGCTGCATCTTCTGTATCCGGTGAATCTCTGAATATATATAAAGGGTTCTCTTTACCTCAGAAAACTGAGGAGTACCTTGTCTCACATGGGCTCAAGGGAGCCCCTTACTCTATCAGTGCTGCTAATGTGCATGAGGGGCTTTTTGGAAGACTTGTTGCTTGTCCTTATCAGGATCCATATTCTTCTGGAGGAAGAACTTTTATGGAGAATTCCTCATTAAAAAGCTTGCAAGGTGCTGTGCAATTTGATGCTAGCAAAGGGGCTGGTTCATCTTCATTTCCAACAAATTCGCAGAGGCATCATACTCTAGGTGGATTCCAAGCAGAGTTGCCTACTTGTCTTTCTTGTATCCTTGAGTTTGATGGTGCATCCAAAGGAAATCCTGGACCAGCTGGTGCAGGAGCTGTATTGCGTGCTGAAGATGGGAGCAAGGTCTATCGGTTGCGTGAAGGCGTTGGCACTCAAACAAATAACGTTGCTGAATATCGAGCTTTAATTTTAGGATTGAAACAAGCCATCAAGAAAGGATTTAAGCACATTCGTGTCCAAGGAGACTCCCTCCTTGTTTGCAATCAGATTCAGGGTCTATGGAAAATCAAAAACCAGAATATGGCTTGCTTATGTAATGAGGCCAAGGAGCTGAAGAATAAGTTTCTTTCATTCAAGATCAATCATGTTCCTAGGGAATATAACACTGAAGCTGATGTTCAAGCAAACCTGGGCATAAATCTCTTAGCTGGTCAAGTTGAAGAAGATTGTCAGTCTCAGTTGTGACGTCACAATTCCGTTCGCAACTCTTCACAATGAATAGCATTATCTCTCGAAAACTCGGTGACTCATGAGAAGTAGATGAATCCACAACATGTAGAGGGCCTTACATGTGACAATGCAAGCCACAGATCAAATACTGTTTGGCAATTTTATCATTCTGAATATTTTTTTTTGGTGAGTGTATCATTCTGAATATGCCATAACATGTAGATGCCCACCATTAGATTAGGGACTAAAAAAGTGCTGCTGTAATGTTTTGGATGGCATTATCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00330	116083	130397	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003676 nucleic acid binding

GO:0004523 RNA-DNA hybrid ribonuclease activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000330s00019526.1	PF01693.11	Cauli_VI	8	47	0.00016
Glyur000330s00019526.1	PF13456.1	RVT_3	187	272	2.40E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.859
SRR1783600	control	3.870
SRR1783602	moderate drought stress	2.132
SRR1811619	moderate drought stress	2.050

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.061
DRR006520	Root Summer glycyrrhizin high producing strain	7.708
DRR006521	Root Winter glycyrrhizin high producing strain	0.291
DRR006522	Root Winter glycyrrhizin high producing strain	0.406
DRR006523	Root Summer glycyrrhizin low producing strain	6.259
DRR006524	Root Summer glycyrrhizin low producing strain	6.617
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.148
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.146

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.040
SRR2868004	Drought Stress (root)	8.435
SRR2967015	Control (root)	7.296

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.143
SRR9715740	Leaf	0.072
SRR9715741	Leaf	0.319
SRR9715739	Root	2.946
SRR9715742	Root	3.590
SRR9715743	Root	2.240

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.223
SRR8749028	MeJA induced 9h	5.769
SRR8749029	MeJA induced 9h	6.527
SRR8749030	Uninduced	2.550
SRR8749031	Uninduced	0.443
SRR8749032	Uninduced	1.555

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	20.199
SRR8400027	Control - Root	21.407