Gene detail information of Glyur000330s00019511 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G28210.1 | 5.00E-40 | zinc finger (AN1-like) family protein |
| NR | AFK39556.1 | 3.48E-73 | unknown [Medicago truncatula] |
| Swissprot | tr|Q67YE6|SAP12_ARATH | 3.00E-49 | Zinc finger AN1 domain-containing stress-associated protein 12 |
| trEMBL | tr|I3SH14|I3SH14_MEDTR | 1.00E-73 | Zinc finger AN1 domain stress-associated protein {ECO:0000313|EMBL:KEH24928.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00330 | 37404 | 37907 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000330s00019511.1 | PF01428.11 | zf-AN1 | 78 | 116 | 1.00E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.731 |
| SRR1783600 | control | 10.212 |
| SRR1783602 | moderate drought stress | 5.315 |
| SRR1811619 | moderate drought stress | 4.620 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 18.063 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 17.955 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.214 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.067 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 60.530 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 57.786 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 14.081 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 16.274 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.425 |
| SRR2868004 | Drought Stress (root) | 29.659 |
| SRR2967015 | Control (root) | 10.134 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 28.998 |
| SRR9715740 | Leaf | 14.926 |
| SRR9715741 | Leaf | 66.593 |
| SRR9715739 | Root | 8.202 |
| SRR9715742 | Root | 16.626 |
| SRR9715743 | Root | 14.246 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 149.912 |
| SRR8749028 | MeJA induced 9h | 356.585 |
| SRR8749029 | MeJA induced 9h | 313.607 |
| SRR8749030 | Uninduced | 271.961 |
| SRR8749031 | Uninduced | 192.537 |
| SRR8749032 | Uninduced | 449.266 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.903 |
| SRR8400027 | Control - Root | 5.873 |