Gene detail

Gene detail information of Glyur000330s00019510

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G04700.1	2.00E-62	ferredoxin thioredoxin reductase catalytic beta chain family protein
NR	NP_001236326.1	2.07E-95	ferredoxin-thioredoxin reductase catalytic chain, chloroplastic [Glycine max]
COG	YP_007059036.1	2.00E-56	ferredoxin-thioredoxin reductase, catalytic subunit [Rivularia sp. PCC 7116]
Swissprot	tr\|O49856\|FTRC_SOYBN	1.00E-97	Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic (Precursor)
trEMBL	tr\|A0A072U5B9\|A0A072U5B9_MEDTR	1.00E-95	Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic {ECO:0000256\|PIRNR:PIRNR000260}

Sequence

Transcript Sequence

>Glyur000330s00019510.1
ATAAAACGCAGAGCAGAACGTTGTTGGTAAAATTGTTTTGGTCTTTTTCAAAGAACTTGGGAACCACACACAAACCATTTTCCTTTTGTTGCTTCAGAAAAAGAAGAAAAAAATTCACCGGCAATGACCTCTCAAGCTTCCACCTTCGCCGTCTCCATTTCTTCCGTCGTATCTCCTCTCCGGCGCCACCGCAATCTCCCTGTCGTTCGAGCCCAAGCGGAACCATCAGATAAATCTGTTGAAATAATGAGGAAGTTCTCAGAGCAATATGCCCGGAAATCAGGAACATACTTTTGTGTAGACAAGGGAGTCACTTCTGTTGTCATCAAGGGCTTAGCTGACCATAAAGATTCATTGGGTGCACCGCTGTGCCCTTGCCGGCATTATGACGATAAAGCTGCTGAGGCTGCACAGGGATTTTGGAATTGCCCGTGTGTTCCCATGAGAGAGAGGAAGGAGTGCCATTGCATGCTCTTTCTCACTCCTGACAACGATTTTNCCGGCAAAGAACAGACCATCACCTTGGATGAAATTAAAGAATCAACAGCAAATATGTAACTCAGATTATTATGTATCTTGTTGGTTGTCTCAGTCTGTATGTTTTGAAAGACAAGGGAAAAGAAAGGTGTAACCATAATATAGGTAATATATTTGTATTTACCGAAAATCACATGTAATTTTTTCATTTTGTGCTCGCTCTTTCTAAATGGCCTAACTCATACTTTGTTACAAATCTCATTCATTTCATAACTTTTTTTTGTTGCTGCTGATGCAAAAACTAATAGAATTCAGATTAGTTGAATAATGATTAGACGATGCATATTTTGACCTGAACAAAATAGAATTCAAAGCACAAATTCAGAATGTTAGACATTTTATCATTATCCAACCTTGTAAAATTGCCGCCATGGTGGCAGCACCTTGGCGGATTCTATGCCAGCCGCTATAGGCCGCAATGCCTATTATATCTGCCATGTTTTCACTGTAGACCGCAACATCGTTGGCTGCCATAATCCGCCATCTGCGATTGATAACACTGTTTCCAACAGCTCTGATTTACTGGAGCTGACTAGAATGAATATACTATTTTTAAGTNCAACAAATCTAGGTACAATATCCACCTTAAACAGAAACAAATCCATGGATTCTAATATCATAGTTTCTGGATGTAATGAAAATTATAACAATCACATTGCACTTNAAAAAGCAATACATCATTCACTGACATAAAACCACTCAAGAATCACATGATTTACACACATTAACCCAATTAGTTATGCATCAACAAGCCTNAACAGAAGGAGCAGTCGAGGTAGAACTAGAACGAGGTCCAGCATTTTTGGCACAATCTTGTCCATTCCTTGAAGCCAGAGCAGCCAAGAACCTGTTTTTCCACCCTTCATTTGCAGCAGAAGGTGTTGAAGGTGAATCTCCTCCTCTGCTACAAGCATGGTCAGCAGGGAAACGGTGTTTGAGGCACACCTTAATGTGGCAGGTTTTACAGGTACTGGTGTTGGAAAATGTCAGAACCTGCTTGCAACGCTTCACGGGGCAAATGGGTTTCTTCTTCTTGTTGGGGTCGCAGTTCCCTGAGTTGTGGTGCCTCTCCAAGATTGCTGCCTCTGCCTCTTCTTCATGTTGTTGTCCCATTTGGCCTGTGGTCTCAATGGACATGGAACATGCCTCGCAAACAACCACTTTCCTGCTGTTGTGGTCGGGTTTCGGACACAAGTGGGACTTGTAGGATCTGTGTTCCAAACANAACACCTGCAAATTACACACCATGTCAAAATAAGAGGGAACATGACTACGTATTCTGTTTCACACGGCTTCTTAAAACTAAGAATCGGTTCTTATAAGAATGATCATTGGAGGGCGTTGAGTGAGCTCTATACATAAAAATGGTTCTTCCATAAGAAGATATTTGAGAGTTGCTCATTGGAGTTATTTAACTCATTTTTTGTAGACCCTATAATGAGTTGGGATCATTTCCATTTATTTTTCTCTTCATTTCTTTTATTATCATGCTTTTGGGAGAATAAATGGAATAAATGACACTCATGTATCACATTTATGTCATTTATTTTTTTCAAAAGCATAATAATGGAAGAAATGAAGAGAAAAAGAAATGGAGAGAATCTCAACTCTCCTATAATACTGCATGAGATTTAAGAATGTACATTAAATTTCACTCCAATGATAGAACTTAATTTGGGAGTTGATTACACAACTGGAGTTGCTTATGGGAGTTCTTTATATAAAGAACTATCTTGGGAGTTAATTACATGTGGATACCACCTAAATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00330	33513	38427	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function
GO:0016730 oxidoreductase activity, acting on iron-sulfur proteins as donors

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000330s00019510.1	PF02943.10	FeThRed_B	37	140	4.80E-44

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.596
SRR1783600	control	2.542
SRR1783602	moderate drought stress	4.343
SRR1811619	moderate drought stress	4.295

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.059
DRR006520	Root Summer glycyrrhizin high producing strain	6.499
DRR006521	Root Winter glycyrrhizin high producing strain	43.822
DRR006522	Root Winter glycyrrhizin high producing strain	42.390
DRR006523	Root Summer glycyrrhizin low producing strain	13.497
DRR006524	Root Summer glycyrrhizin low producing strain	13.722
DRR006525	Leaf Summer glycyrrhizin high producing strain	122.211
DRR006526	Leaf Summer glycyrrhizin high producing strain	121.702

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.523
SRR2868004	Drought Stress (root)	23.817
SRR2967015	Control (root)	13.603

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	74.957
SRR9715740	Leaf	95.794
SRR9715741	Leaf	90.020
SRR9715739	Root	6.195
SRR9715742	Root	11.151
SRR9715743	Root	10.774

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	43.415
SRR8749028	MeJA induced 9h	78.793
SRR8749029	MeJA induced 9h	68.757
SRR8749030	Uninduced	84.967
SRR8749031	Uninduced	75.906
SRR8749032	Uninduced	77.556

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.369
SRR8400027	Control - Root	6.706