Gene detail

Gene detail information of Glyur000330s00019508

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G01370.1	0	CRM family member 2
NR	XP_004489339.1	0	PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q9FYT6\|CRS1_MAIZE	1.00E-121	Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic (Precursor)
trEMBL	tr\|G7KJD3\|G7KJD3_MEDTR	0	Group IIA intron splicing facilitator CRS1 {ECO:0000313\|EMBL:AES74561.2}

Sequence

Transcript Sequence

>Glyur000330s00019508.1
GTCTGATAGTCTCGTTATCCATAATAATATCCATGAAACTAGCTTGAGATGTTGCTTCCTGCAACTCACTTCCACACTTTCACTCTTCTTCTTCATTGCTCTTCTTCCCCGTTCACTTCCCCACCAAATCAAATACAAAAACCCTCGACCCCACCAAATTCGTTATCCGGTGCTCCGATTCCGAAACCCGAACCGTACCCGATTCCGCCATTCAACGAATCGCCGACAAGCTCCGCTCCCTCGGCATCACCGACCACCAATCCCCCGCCTCCANTCCGTCCACCGCAACCGCTGCCGGAGAAATCTTCGTCCCGTTGCCGCACCAACTCCCGAAGCAGCGCGTGGGGCACACGATCGACCAGAGTTGGAGCACACCGGAGAACCCTGTCCCGGGGAAGGGATTCGCGGCGCTGAGNGAGAATGAGGTGGAGAAGCAGCGGAGACAGAATGAGAAGGAGANAGAGGAGAGGAGAAAGGGAGGGAGGAGAGTGGAGGCGCCAACGGTGGCGGAGCTGAGCCTGACGGAGGCGGAGATAATGAGGCTGAGGAAGCTAGGGTTTGGGATGAAGAAGAAGCTCAAGGTTGGGAAGGCGGGGATCACGGAAGGGATCGTGAATGGGATTCACGAGNGGTGGAGGAGTCACGAGGTGGTGAAGATCGTGTGTGAGGATCTTTGCAGAACTAACATGAAAAGGACTCATGACTTATTGGAGAGAAAAACTGGTGGACTTGTTGTTTGGAGATCGGGAAGTAAGATAATATTGTACAGAGGGATTGATNATAAGTATCCATACTTTCTATCAGATAAAGTTTTGAGAGATGAGAACAATGGTGATGCTATGCAACATATGGATGGTGATGATANAAATTGTAATGAAAAAGAGAGCCATTCATCGGAAATGAATTCAGCGACACATGCTGGGCAAAATTCAAATTTCAAAACAGCAAAACCAGCTTTGATACAAGGTGTTGGTACTCCAAATAAAGTACGATTTCAACTGCCAGGTGAGGCAGAGCTTGTAGAAGATGCAGACAAGTTATTAGAGGGGCTCGGACCACNGTTTACTGATTGGTGGGGGTATGACCCTCTACCTGTTGATGCTGATCTTCTCCCTGCTGTTATTCCTGGATTTAGGAAGCCTTTTCGCCTACTTCCATATGGTGTGAANTCTAAACTAACGGATGATGAAATGACCACATTGAGGAGACTTGGCAGACCTTTACCATCCCATTTTGCATTAGGTAGAAACATGAAACTTCAAGGATTGGCTGCTGCAATTATCAAGCTTTGGGAAAGATGTGAGATTGTCAAGATTGCTGTAAAGAGAGGTGTGCAGAATACTGACAGTGAGACTATGGCTGAAGAGATTAAGTATCTGACTGGAGGAACTCTTCTTTCTCGGAACAATGAGTTTATTGTCTTTTATAGAGGAAAGGACTTCTTGCCAGCTGCAGTGTCTTCAGCAATTGAACAGCGTAGGAATATTGTAACAAACAAACTGAAGGCTGAAAACAGTTCATCAGATGCAGTCATTAAACAAAGAATGTTTACTAAGGCTGAGGCAGCTCTTAAAAGGACTAGCAACAAATTATCANTGGCATTAGAGAAGAAAGCAAATGCTGAAAAACTTCTAGCAGAGCTGGAAAGTGCNGAGAGCCCTCCTGAACAAGAAATAGTTAAAGAAGGTATCACTGAAGAAGAGAGATACATGTTGCGGAAGATTGGCTTGAAGATGAGCCCCTTCCTGTTACTAGGTAGACGAGGGGTTTTTGATGGAACAGTGGAAAATATGCATCTTCATTGGAAATATCGGGAACTTGTGAAGATAATATGCAAACAGGGAAGCCTGGAATCTGTCCATCAGATAGCTCGGACCTTAGAGGCAGAAAGTGGCGGAATATTAGTAGCAGTTGAGAGAGTGAACAAGGGCTATGCAATCATTGTTTATCGTGGAAAGAATTATAGTAGGCCTTCTACTTTGAGGCCTCAAACACTTCTAAATAAAAAGCAAGCATTGAAGCGTTCTATAGAGGCACAGCGCTGTGAGTCGTTGAAGCTTCATGTTTTGAAGCTAGACAAGAACATAAACGAATTGAAACGTCAAATGGTTAAAGATGAGGCTAACAGTAAGCAGATAGCTGAAGAGTTGAGATCTGACATGCTTTTGGCATGATTCAAGGCTACAGACAGACATGAAGCTTGTTCAGATTCCATAAATTGCAATTCTCCAAAGGAAGCTTCTGTTGACAATCAACAAGCTATACAGGAGCAGCCCGTTGAGCTGATTGATAGTGGTGGAGCACGTCAAAGTGAACCAGAATCCTCGGCTGGTTTGATTCATAAAGAAAAACAGTTGGATGAAGTGAATGATTCTGTGGTTGATACTGGGCACTGTGTCTCTAATAACAAAGCAATGGAATCATCAATCACATCATCCAAAAGTGATTCNGAAGCATCAGCTCCAGTGATAAAAGGGAGTTCAAATGAGTTGCCTTCTANATCTCTATATCTTTCCAATAGAGAGAGACTTCTTCTTCGAAAGCAGGCCTTAAAGATAAAAAAGCGACCTGTCCTTGCCATAGGAAAGAGCAATATTATGACTGGTGTTGCGAAAGCAATCAACACTCACTTCCAGAAACACCCTTTTGCCATAGTTAATGTCAAAGGAAGGGCAAAAGGGACCTCAGTTCAGGAGGTGGTGTCCGAGCTAGAGCAAGCAACAGGTGCCGTTCTAGTCTCTCAAGAGCCTAGCAAAATCATCCTCTACAGGGGTTGGGGAGCAGGACAGGAACCTAGCACTGCTATAAATGATAATAAAGTTGGTAAAAATGGAGGGGAAAAGCCCAGTGTGTCTCCTGAACTGTTGCAAGCAATCAGANTTGAATGTGGGTTGCAGTAACAAACAGAAGATTACAACTCCTTATTCTACTGACAAATTGCTGTAATTCTTTCATCAGCACTGCTTATGGTAGTACTGGTGGTGTTTGTGTTAGGAATTAAAGGAGATGGGGCTATATATATGAAGTCAAAGAGAGGCAAATTGGCAATAGTTGATGATGGATATTGAAAATTGAGGGTGTCAGAGATGTTTGATCTTAGTGGGAAGGAGAAACACCAAACAGTGAACTGGAAAAAAAATTAAGAAATAGACAAAAGGGTAGAGCCTTGATTAATCTTGAAAGCCATTCTTCTGTCTCTCGGTCAAACATTTCTGTTCCTCTGGGACTGAACTTACATGTCTCAACTCTCATGTAATAGCAGCTCCCAGTTACTCCTCTCATTCCCCTACCAAGTGCCTTGTATCTTTACAATNCCTCAAGGGCCAGAGACACATAGTCACTATGTTCCATATGCTGAATCAAGTTGAACGATAGTGATTTAGTTGCAGTAACTAATAGTAGAAGGAAAAAGAATGTAGAAGAAAAGCACAGTTAATAAAAACGAGAATAGAAAAGAATATNGTTTGTTTGAATGCATGGAAAAAGAATAAAGAATAAAATGTCTTCATTGATTGGGAATTTGGAGATCGACTACATCCTAACCCTGTATTTACTGTTCCTTTCCTCATTATTCATTAAAGTGCAATGTTGGCTAATTATTAACACTGAATATTTGAAAATTCAATGTTGTGTATCCACTATCCAGACAGCTTATGAAAGTAGTGAGTTGCAGCTACCATTAATAGATAGCACTGTGNATATTGTTTGTTTCCCTCTTGAGAATGGACTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00330	18383	25954	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003723 RNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000330s00019508.1	PF01985.16	CRS1_YhbY	2	78	8.30E-21
Glyur000330s00019508.1	PF01985.16	CRS1_YhbY	214	298	6.60E-22
Glyur000330s00019508.1	PF01985.16	CRS1_YhbY	385	472	2.60E-21
Glyur000330s00019508.2	PF01985.16	CRS1_YhbY	2	78	1.20E-20
Glyur000330s00019508.2	PF01985.16	CRS1_YhbY	214	298	1.00E-21
Glyur000330s00019508.2	PF01985.16	CRS1_YhbY	385	472	3.90E-21
Glyur000330s00019508.2	PF01985.16	CRS1_YhbY	595	681	1.20E-15
Glyur000330s00019508.3	PF01985.16	CRS1_YhbY	2	78	9.90E-21
Glyur000330s00019508.3	PF01985.16	CRS1_YhbY	214	307	2.60E-19
Glyur000330s00019508.3	PF01985.16	CRS1_YhbY	394	481	3.10E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.174
SRR1783600	control	6.111
SRR1783602	moderate drought stress	7.202
SRR1811619	moderate drought stress	7.094

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.362
DRR006520	Root Summer glycyrrhizin high producing strain	10.442
DRR006521	Root Winter glycyrrhizin high producing strain	7.351
DRR006522	Root Winter glycyrrhizin high producing strain	7.068
DRR006523	Root Summer glycyrrhizin low producing strain	8.996
DRR006524	Root Summer glycyrrhizin low producing strain	8.709
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.921
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.882

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.481
SRR2868004	Drought Stress (root)	14.293
SRR2967015	Control (root)	19.570

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.920
SRR9715740	Leaf	10.671
SRR9715741	Leaf	13.078
SRR9715739	Root	0.701
SRR9715742	Root	4.767
SRR9715743	Root	4.565

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.477
SRR8749028	MeJA induced 9h	7.531
SRR8749029	MeJA induced 9h	4.385
SRR8749030	Uninduced	3.486
SRR8749031	Uninduced	1.777
SRR8749032	Uninduced	1.765

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.797
SRR8400027	Control - Root	13.300