Gene detail information of Glyur000329s00019852 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G42570.1 | 2.00E-93 | TRICHOME BIREFRINGENCE-LIKE 39 |
| NR | XP_004487169.1 | 7.66E-155 | PREDICTED: uncharacterized protein LOC101503983 [Cicer arietinum] |
| Swissprot | tr|Q9SIN2|TBL39_ARATH | 5.00E-115 | Protein trichome birefringence-like 39 |
| trEMBL | tr|A0A072VCD5|A0A072VCD5_MEDTR | 6.00E-148 | Pmr5/Cas1p GDSL/SGNH-like acyl-esterase family protein {ECO:0000313|EMBL:KEH39261.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00329 | 173050 | 193304 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000329s00019852.1 | PF14416.1 | PMR5N | 50 | 98 | 1.40E-21 |
| Glyur000329s00019852.1 | PF13839.1 | PC-Esterase | 103 | 260 | 1.30E-38 |
| Glyur000329s00019852.1 | PF13839.1 | PC-Esterase | 261 | 360 | 9.10E-16 |
| Glyur000329s00019852.2 | PF14416.1 | PMR5N | 50 | 98 | 8.90E-22 |
| Glyur000329s00019852.2 | PF13839.1 | PC-Esterase | 103 | 260 | 1.30E-36 |
| Glyur000329s00019852.3 | PF14416.1 | PMR5N | 50 | 98 | 8.90E-22 |
| Glyur000329s00019852.3 | PF13839.1 | PC-Esterase | 103 | 260 | 1.00E-37 |
| Glyur000329s00019852.4 | PF13839.1 | PC-Esterase | 5 | 66 | 2.00E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.727 |
| SRR1783600 | control | 3.716 |
| SRR1783602 | moderate drought stress | 3.606 |
| SRR1811619 | moderate drought stress | 3.588 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.276 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.142 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.563 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.477 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.765 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.282 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 24.309 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 23.265 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 71.099 |
| SRR2868004 | Drought Stress (root) | 52.313 |
| SRR2967015 | Control (root) | 81.399 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 139.309 |
| SRR9715740 | Leaf | 81.512 |
| SRR9715741 | Leaf | 236.972 |
| SRR9715739 | Root | 15.147 |
| SRR9715742 | Root | 33.349 |
| SRR9715743 | Root | 30.425 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 181.379 |
| SRR8749028 | MeJA induced 9h | 560.933 |
| SRR8749029 | MeJA induced 9h | 565.595 |
| SRR8749030 | Uninduced | 365.106 |
| SRR8749031 | Uninduced | 351.645 |
| SRR8749032 | Uninduced | 664.690 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 18.371 |
| SRR8400027 | Control - Root | 24.277 |