Gene detail

Gene detail information of Glyur000329s00019838

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G06260.1	2.00E-91	Cysteine proteinases superfamily protein
NR	XP_004513101.1	0	PREDICTED: KDEL-tailed cysteine endopeptidase CEP2-like [Cicer arietinum]
COG	YP_504536.1	1.00E-27	peptidase C1A, papain [Methanospirillum hungatei JF-1]
Swissprot	tr\|A2XQE8\|SAG39_ORYSI	1.00E-110	Senescence-specific cysteine protease SAG39 {ECO:0000305} (Precursor)
trEMBL	tr\|A0A059XQT6\|A0A059XQT6_CICAR	0	Cysteine protease {ECO:0000313\|EMBL:AIA26572.1}

Sequence

Transcript Sequence

>Glyur000329s00019838.1
ATGCAATCAGAACTAGCCATGAAGACATCTATAACATTAAGCGTTGCTATCCTTAATCTTCTTATTGTGTGCAATCTATGGATAACTGCAAGTGCATATCCTACAATGCAAAAGAATGATTCAATTGATCCAAAAGTCATGAGAAAGAGGTATGAAAGTTGGTTGAAACAACATGGACNACAGTACAGAGACAGAGAAGAATGGGAAGTCCGTTTTGGCATTTACCAAGCAAATGTTGAGTTTATAGAGTTCCATAACTCTCAAAACTATTNTTACAAGCTCACAGACAACAAGTTTGCGGATCTTACAAATGAAGAGTTCAGAATAGCCTATCTGGGTTTCGGACCTAGGTTGCGTAAACAGACAACAGAATTCATGTATCATGAACATGAGGATCTACCAAAAAGTATAGATTGGAGGAAGAAAGGTGCAGTTACACANATCAAAGATCAAGGCCATTGTGGAAGTTGTTGGGCATTCTCAGCAGTGGCAGCTGTCGAAGGCATCAACAAGATAAAAACAGGGAAGTTGATTTCTCTGTCTGAACAACAGCTGATCGATTGTGATAATGGCAATGGGAATGAAGGCTGCGAAGGTGGCAACATGGAAAGAGCATTCACCTACATTAGCAAGCAGGGGGGGCTCGCCACTGATAAAGAATATCCGTATCAAGGATCAGATAGTAACTGCAACACCACCGAAGCTAAAGAACATGTTGTCACTATAAGCGGCCATGAAAATGTACCTGCTAGCAATGAGAAAATGCTAAAATTTGTTGTTGCTCATCAACCTGTCTCTGTTGCAACTGATGCTGGAGGTCTTCCATTTAGATTTTATTCAAAAGGTATCTTCTCTGGAATTTGCGGAAAGGAGCTCAATCATGGCATGACTATAGTTGGGTATGGAGAAGAAAATGGTGAAAAGTTCTGGCTTGTGAAGAATTCATGGGCAAATGACTGGGGAGAATCTGGCTATGTTAGGATGAAGCGTGATACTAAGGATAAAGACGGCACTTGTGGCATTGCCATGGAAGCTACCTTCCNCATCAAGCATTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00329	101074	102482	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function
GO:0008234 cysteine-type peptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000329s00019838.1	PF08246.7	Inhibitor_I29	51	107	4.60E-13
Glyur000329s00019838.1	PF00112.18	Peptidase_C1	133	347	8.50E-80

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.381
SRR1783600	control	6.139
SRR1783602	moderate drought stress	6.795
SRR1811619	moderate drought stress	6.754

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.100
DRR006520	Root Summer glycyrrhizin high producing strain	6.447
DRR006521	Root Winter glycyrrhizin high producing strain	3.397
DRR006522	Root Winter glycyrrhizin high producing strain	3.959
DRR006523	Root Summer glycyrrhizin low producing strain	9.460
DRR006524	Root Summer glycyrrhizin low producing strain	8.401
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.638
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.382

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.015
SRR2868004	Drought Stress (root)	4.624
SRR2967015	Control (root)	4.668

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.234
SRR9715740	Leaf	2.493
SRR9715741	Leaf	2.925
SRR9715739	Root	0.741
SRR9715742	Root	1.205
SRR9715743	Root	1.319

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.263
SRR8749028	MeJA induced 9h	6.615
SRR8749029	MeJA induced 9h	6.944
SRR8749030	Uninduced	6.415
SRR8749031	Uninduced	5.816
SRR8749032	Uninduced	5.376

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.926
SRR8400027	Control - Root	4.652