Gene detail

Gene detail information of Glyur000329s00019837

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G06270.1	3.00E-101	Pentatricopeptide repeat (PPR) superfamily protein
NR	XP_004487183.1	0	PREDICTED: pentatricopeptide repeat-containing protein At1g06270-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q9LNC0\|PPR16_ARATH	2.00E-140	Pentatricopeptide repeat-containing protein At1g06270
trEMBL	tr\|K7LW53\|K7LW53_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G33570.5}

Sequence

Transcript Sequence

>Glyur000329s00019837.1
ATGCACCGTAGATTTCTTCTCCACTTCTGCCCTATTCTGAACCAATGTCCTTCAGTTCGTTCAGTGTCTTCATCACAAAGACTTGAGCAGGCTGTTAGAGCTGAAGTAGAAGCCAAAAACTACGTTAAAATTCCCGATCTTCTCATTTCCTTGGAGTCATGCCAAAATTCAAATCCTTTTTCTTTTTTCTCTTCTTTTACACAGAACTTACAAGTGCAAATTGTTGATGAAATGTTGCAATCTTTTATACCTCTTAGACCTCGCTCTAAGCCCCAGCTAGCCTATTCCTACCTTCTTTCTTACACCCTCCAAAGTTCTCATCCCCTCCCTCTTGCACTTGCTGTCCTACAACGGACTCTACGTTCTGGTTGTGTTCCAGTTCCTCAGACACTTGTTCTCCTCTCATCTGCTTGGTTGGACCGGCGATGTCTGTCTCATTCTGTAGCTAATATTTTACTTGAGATGCAATCAATTGGATATCATCCTGACTGTGGGACTTGCAATTATCTACTATCATCACTTTGTGCTGTTGATCAATTAGTGGAGGCTGTTAAAGTCCTGAAGGGTATGGGTGGAGCAGGATGTATTCCTGATTCAAATAGTTATGGTACTGTAATTGGTGCAATGTGCAGAGCGAGAAGGACTGCTGAGGCACAGGATTTGATGAAGCAAATGGTGGTGAAATATGGGTTGACCCCAGGACAGGGAACACTGGTGAAATTGATGGCAGCATTACGGGCAAACAGGGAGATATGGAAAGCTGTTGAGGTGATTGAATTCCTGGAGAAAGAGGGTAACTCTGTTGGATTTGAGAGTTATGAGCTGGTGATTGANGGGTGCTTGGAGAAATGTGAGTATGTTTTGGCTGGAAAGGTTGCGATGGGGATGACAGAGAGAGGTTTTATACCATATATCAAGGTGAGGCAGAAGATAATTGAAGGTTTGGCCAGCATCGATGAGTGGAAGATAGCTTGTGCTGTGAGACAAAGATTTGCAGCACTTAAATCTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00329	99245	100255	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000329s00019837.1	PF13041.1	PPR_2	163	211	3.10E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.312
SRR1783600	control	6.346
SRR1783602	moderate drought stress	7.023
SRR1811619	moderate drought stress	7.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.747
DRR006520	Root Summer glycyrrhizin high producing strain	6.964
DRR006521	Root Winter glycyrrhizin high producing strain	2.801
DRR006522	Root Winter glycyrrhizin high producing strain	2.950
DRR006523	Root Summer glycyrrhizin low producing strain	7.646
DRR006524	Root Summer glycyrrhizin low producing strain	7.188
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.750
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.476

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.565
SRR2868004	Drought Stress (root)	10.408
SRR2967015	Control (root)	10.634

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.375
SRR9715740	Leaf	3.315
SRR9715741	Leaf	3.725
SRR9715739	Root	0.601
SRR9715742	Root	3.213
SRR9715743	Root	1.682

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.219
SRR8749028	MeJA induced 9h	12.096
SRR8749029	MeJA induced 9h	9.386
SRR8749030	Uninduced	9.941
SRR8749031	Uninduced	9.711
SRR8749032	Uninduced	5.586

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.668
SRR8400027	Control - Root	10.325