Gene detail

Gene detail information of Glyur000329s00019836

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G75840.1	2.00E-74	RAC-like GTP binding protein 5
NR	XP_004487185.1	1.39E-114	PREDICTED: rac-like GTP-binding protein RAC2-like [Cicer arietinum]
COG	YP_003319433.1	4.00E-12	small GTP-binding protein [Sphaerobacter thermophilus DSM 20745]
Swissprot	tr\|Q6Z7L8\|RAC7_ORYSJ	3.00E-112	Rac-like GTP-binding protein 7 (Precursor)
trEMBL	tr\|V7BUW1\|V7BUW1_PHAVU	3.00E-113	Uncharacterized protein {ECO:0000313\|EMBL:ESW21787.1}

Sequence

Transcript Sequence

>Glyur000329s00019836.1
GCTTTTGGTTGGTGCTGTCCAAACTACAATTTTTACCATCAACTTTTCCTTTTCTTTTTCTCCATTTGTAATTAATGATTCTCATTTCTAACATTAGTCCTCGGGTATAGCCATTAGCCAAGCAATGCTCATATTCTAAATACTCATTATTCACTCTCTCCCTTGTACAATACTTAACCAACTAACACCACTACAACACCAAACGACTCCTTTTGTTGATCTAAAACTCTGGCCTTCCCCTTAAAGAAACAGAAAGCCAAATGCAATAATGGTCAAGATAAAAGAGGCACACTAAAGTTGGTGCTAAAGGGACATGNCTTATTAAATGCTACTCTCTCCCCCCCTCCATTTCTATTCAAAATTCAAATTGGCCCCTCTGGCCCTTCTACCCTTTCTTTCTAGACATCATACTTTCTTCTTTCCATCGTTCTATTTTTGGTTCCTATTTTTCAAGTGAAAGAAACTCACAGAAACTTTCCAGTGATGGAAGCAACAAATTGGTAGAGGAAGCTTTGCTGTGAGGCGATCAAGAAAGTCAGTTTTAGAAAAAGAAAAAAAAAAGAGTCTGAAAATGAGCACAGCAAGATTCATCAAATGTGTTACTGTTGGAGATGGAGCTGTGGGAAAGACGTGTATGCTCATCTCTTACACCAGCAACACATTCCCCACGGATTATGTGCCTACAGTTTTTGACAACTTCAGTGCAAATGTGGTGGTTGATGGCAGCACAGTTAACCTGGGATTATGGGACACTGCTGGACAGGAGGATTACAACAGGCTTAGGCCTTTGAGCTACAGAGGAGCAGATGTGTTCTTGCTGGCCTTTTCCCTCCTCAGCAGAGCCAGCTATGAGAATATCTCTAAAAAGTGGATTCCTGAACTGAGACATTATGCCCCAACTGTGCCAATTGTACTTGTGGGAACCAAACTTGGTATATTTGAGGGAAGACAGGCAGGAGAAGAGCTGAAGAGGGCAATTGGTGCTGCTGTGTACATAGAATGCAGCTCAAAGACTCAGCAGAATGTGAAGGCTGTGTTTGATGCTGCAATCAAGGTGGTTTTGCAGCCTCCTAAGCCAAAGAAAAAACGAAAGAAGAGCAGATCATGCGTTTTCCTTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00329	94675	96854	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0007165 signal transduction

GO:0007264 small GTPase mediated signal transduction

GO:0015031 protein transport

cellular_component

GO:0005622 intracellular

GO:0016020 membrane

molecular_function
GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000329s00019836.1	PF00071.17	Ras	8	164	6.80E-48

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.002
SRR1783600	control	5.636
SRR1783602	moderate drought stress	2.489
SRR1811619	moderate drought stress	2.315

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	26.698
DRR006520	Root Summer glycyrrhizin high producing strain	26.529
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	12.284
DRR006524	Root Summer glycyrrhizin low producing strain	12.611
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.265
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.278

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	32.411
SRR2868004	Drought Stress (root)	25.177
SRR2967015	Control (root)	17.451

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.507
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.524
SRR9715739	Root	3.894
SRR9715742	Root	13.869
SRR9715743	Root	11.472

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.008
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.009
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.449
SRR8400027	Control - Root	19.299