Gene detail

Gene detail information of Glyur000329s00019835

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G60860.1	2.00E-105	RAB GTPase homolog A1F
NR	XP_004487187.1	2.19E-135	PREDICTED: ras-related protein RABA1f-like [Cicer arietinum]
COG	YP_008431664.1	2.00E-27	hypothetical protein N186_01315 [Thermofilum sp. 1910b]
Swissprot	tr\|Q9FJH0\|RAA1F_ARATH	2.00E-133	Ras-related protein RABA1f
trEMBL	tr\|A0A059BVM0\|A0A059BVM0_EUCGR	8.00E-134	Uncharacterized protein {ECO:0000313\|EMBL:KCW69976.1}

Sequence

Transcript Sequence

>Glyur000329s00019835.1
AGAAGAGTCATTTGAGGCTTGAACTCTTCTCTGCAACAGGCGCCTACCTTCCTTCTTCGTACACGCTACACGCCTCTCTCTCTCTCTCTCTCCGTCTGCGCTGCAAAGTACAATTACAACTAGAATACACACAAACAAACAAAAAAGTTGCCAAAATTGTATAAACCAAGTTATTAGTACTTCCAACCCATTTCATTTCATTGAATTTGGATCTAACAAAAAACCAGTGACACCCCACCTCCTGCTGCTTCGAATCGAGAATCCATTGTTTGCTTGGTTCGATTCAATGGGTGCGGACGAGGAGTACGACTACTTGTTCAAGTTGGTGCTGATCGGAGACTCGGGTGTTGGCAAGTCCAACCTCTTGTCTAGATTCACCAGAAACGAGTTCAACTTGGAATCCAAATCCACCATCGGCGTCGAATTCGCCACCCGCAGCGTCCGCATCGACGACAAGCTTGTCAAGGCTCAAATCTGGGACACTGCCGGTCAAGAGAGATATCGCGCAATCACGAGTGCTTACTATCGAGGAGCGGTNGGTGCATTGCTGGTGTACGATGTCACGAGGCAAGTGACTTTTGAGAACGTGGAGAGATGGTTGAAGGAGCTTCGGGATCACACGGATGCCTACACTGTGATNATGCTCGTGGGAAACAAGGCAGATCTGGGACACCTGCGCGCCGTGTCGACCGAGGACGCCGCTGCATTCGCCGAGAAGGAGAACACGTATTTCATGGAGACCTCTGCACTCGAGGCCTTGAACGTGAACAATGCCTTCATAGAAGTGCTCACTCAGATATACAATGTTGTGAGTAGGAAGACTCTTGAGAAGGGGAATGACCCTGGTGCCTTNCCCAAAGGAGAGACCATCAATATTGGCACTAAAGATGATGTATCAGCGGTTAAAAAGACTGGATGCTGCAGCACGGCATAGTTTGAAATAGGACGTTGATATTCTTCAACTAAATCCTCATCATTTTGGGATCCATATATATGAAATGTTTGATAATTGATGCCTATTATTTTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00329	89800	91812	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006886 intracellular protein transport

GO:0006913 nucleocytoplasmic transport

GO:0007165 signal transduction

GO:0007264 small GTPase mediated signal transduction

GO:0015031 protein transport

cellular_component

GO:0005622 intracellular

GO:0016020 membrane

molecular_function

GO:0003924 GTPase activity

GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000329s00019835.1	PF00071.17	Ras	12	172	5.30E-60

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	91.980
SRR1783600	control	93.493
SRR1783602	moderate drought stress	32.144
SRR1811619	moderate drought stress	32.036

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	66.290
DRR006520	Root Summer glycyrrhizin high producing strain	65.201
DRR006521	Root Winter glycyrrhizin high producing strain	52.596
DRR006522	Root Winter glycyrrhizin high producing strain	51.391
DRR006523	Root Summer glycyrrhizin low producing strain	171.063
DRR006524	Root Summer glycyrrhizin low producing strain	173.682
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.341
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.662

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	63.383
SRR2868004	Drought Stress (root)	50.799
SRR2967015	Control (root)	43.343

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	21.380
SRR9715740	Leaf	21.481
SRR9715741	Leaf	22.670
SRR9715739	Root	100.505
SRR9715742	Root	47.818
SRR9715743	Root	55.690

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	143.279
SRR8749028	MeJA induced 9h	174.231
SRR8749029	MeJA induced 9h	211.564
SRR8749030	Uninduced	386.819
SRR8749031	Uninduced	284.716
SRR8749032	Uninduced	251.404

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	50.624
SRR8400027	Control - Root	69.072