Gene detail information of Glyur000329s00019828 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G44130.1 | 2.00E-54 | FASCICLIN-like arabinogalactan protein 13 precursor |
| NR | KHN36673.1 | 2.31E-109 | Fasciclin-like arabinogalactan protein 6 [Glycine soja] |
| COG | YP_001515796.1 | 2.00E-08 | fasciclin domain-containing protein [Acaryochloris marina MBIC11017] |
| Swissprot | tr|Q9FFH6|FLA13_ARATH | 7.00E-72 | Fasciclin-like arabinogalactan protein 13 (Precursor) |
| trEMBL | tr|C6T5L7|C6T5L7_SOYBN | 1.00E-109 | Putative uncharacterized protein {ECO:0000313|EMBL:ACU17039.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00329 | 75919 | 76692 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000329s00019828.1 | PF02469.17 | Fasciclin | 52 | 184 | 1.90E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 113.525 |
| SRR1783600 | control | 113.170 |
| SRR1783602 | moderate drought stress | 191.571 |
| SRR1811619 | moderate drought stress | 191.836 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 43.424 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 44.153 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.433 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.216 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 100.001 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 99.366 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 47.688 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 48.231 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 292.519 |
| SRR2868004 | Drought Stress (root) | 201.733 |
| SRR2967015 | Control (root) | 177.230 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 40.091 |
| SRR9715740 | Leaf | 51.952 |
| SRR9715741 | Leaf | 34.186 |
| SRR9715739 | Root | 106.585 |
| SRR9715742 | Root | 35.150 |
| SRR9715743 | Root | 47.678 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 54.986 |
| SRR8749028 | MeJA induced 9h | 65.756 |
| SRR8749029 | MeJA induced 9h | 41.377 |
| SRR8749030 | Uninduced | 58.704 |
| SRR8749031 | Uninduced | 5.052 |
| SRR8749032 | Uninduced | 13.438 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 32.760 |
| SRR8400027 | Control - Root | 51.755 |