Gene detail information of Glyur000329s00019826 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G28480.1 | 3.00E-30 | Thioredoxin superfamily protein |
| NR | AFK35318.1 | 2.17E-70 | unknown [Lotus japonicus] |
| Swissprot | tr|Q9SGP6|GRXC9_ARATH | 2.00E-37 | Glutaredoxin-C9 |
| trEMBL | tr|I3S4X6|I3S4X6_LOTJA | 8.00E-71 | Uncharacterized protein {ECO:0000313|EMBL:AFK35318.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00329 | 67455 | 67967 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000329s00019826.1 | PF00462.19 | Glutaredoxin | 78 | 142 | 1.30E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.101 |
| SRR1783600 | control | 0.143 |
| SRR1783602 | moderate drought stress | 0.273 |
| SRR1811619 | moderate drought stress | 0.211 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.935 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.140 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.128 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.835 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 19.974 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 19.015 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.616 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.629 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 13.735 |
| SRR2868004 | Drought Stress (root) | 57.805 |
| SRR2967015 | Control (root) | 59.259 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 75.006 |
| SRR9715740 | Leaf | 22.890 |
| SRR9715741 | Leaf | 103.780 |
| SRR9715739 | Root | 17.280 |
| SRR9715742 | Root | 15.416 |
| SRR9715743 | Root | 15.561 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 396.740 |
| SRR8749028 | MeJA induced 9h | 880.483 |
| SRR8749029 | MeJA induced 9h | 919.856 |
| SRR8749030 | Uninduced | 1091.447 |
| SRR8749031 | Uninduced | 1868.551 |
| SRR8749032 | Uninduced | 2153.669 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 21.106 |
| SRR8400027 | Control - Root | 14.340 |