Gene detail information of Glyur000328s00018345 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G21840.1 | 1.00E-87 | urease accessory protein F |
| NR | XP_004491206.1 | 4.56E-165 | PREDICTED: LOW QUALITY PROTEIN: urease accessory protein UreF-like [Cicer arietinum] |
| COG | YP_005373624.1 | 2.00E-36 | urease accessory protein uref [Corallococcus coralloides DSM 2259] |
| Swissprot | tr|Q9XHZ3|UREF_ARATH | 2.00E-119 | Urease accessory protein F |
| trEMBL | tr|G7K7S6|G7K7S6_MEDTR | 3.00E-159 | Urease accessory protein UreF {ECO:0000313|EMBL:AET00122.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00328 | 188877 | 189653 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000328s00018345.1 | PF01730.11 | UreF | 68 | 216 | 4.00E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.507 |
| SRR1783600 | control | 12.296 |
| SRR1783602 | moderate drought stress | 5.935 |
| SRR1811619 | moderate drought stress | 5.621 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.534 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.646 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.912 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.432 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 13.453 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.097 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.459 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.670 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 15.924 |
| SRR2868004 | Drought Stress (root) | 13.719 |
| SRR2967015 | Control (root) | 13.184 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.704 |
| SRR9715740 | Leaf | 7.533 |
| SRR9715741 | Leaf | 8.159 |
| SRR9715739 | Root | 9.179 |
| SRR9715742 | Root | 7.725 |
| SRR9715743 | Root | 7.829 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.317 |
| SRR8749028 | MeJA induced 9h | 5.161 |
| SRR8749029 | MeJA induced 9h | 7.468 |
| SRR8749030 | Uninduced | 1.767 |
| SRR8749031 | Uninduced | 1.281 |
| SRR8749032 | Uninduced | 2.313 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.062 |
| SRR8400027 | Control - Root | 12.082 |