Gene detail

Gene detail information of Glyur000328s00018337.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G26970.1	2.00E-86	Polynucleotidyl transferase, ribonuclease H-like superfamily protein
NR	XP_004491197.1	1.20E-149	PREDICTED: oligoribonuclease-like [Cicer arietinum]
COG	YP_003269562.1	4.00E-60	exonuclease RNase T and DNA polymerase III [Haliangium ochraceum DSM 14365]
Swissprot	tr\|Q9ZVE0\|ORN_ARATH	4.00E-108	Oligoribonuclease
trEMBL	tr\|I1M796\|I1M796_SOYBN	1.00E-147	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA14G04450.1}

Sequence

Transcript Sequence

>Glyur000328s00018337.1
CTGCGCCAAAGTTGTTAACTTCAGAGAGACAGAAACAAATTGGAAGAAGCAGAGAAATGGAGAAAATTGCAAACTCGTTTTCGGTGTTAGAACTTGACGCTGATGACAGCGACGTTCCCATTACTTCCCCTCCCACTGCCGGTAGTAGCGGAAAGAGAGTTAATGGCAATGCTGACACTTCATCGGTGAAAAAAGAGAAACAAGATCAACAAAACCTAGTGACTCCTTCGTGTGAATACAGGTTACCTCTTGTCTGGATTGACTTGGAAATGACCGGTTTAAATATTGAAGTGGATAGAATACTGGAGATTGCTTGTATAATTACAGATGGAAATTTAACCAAAACAGTGGAGGGTCCTGATTTGGTCATCCATCAAACTAAGGAATGCCTTGACAGGATGGGAGAATGGTGTCAAAGTCATCATGCAGCTAGTGGGTTAACAAAAAAGGTGCTTCAAAGTACAATTAGTGAAAGAGAAGCTGAAAAACAGAAACTGCANGTTATTGAATTCGTTAAGAGACATGTTGGCTCATACACACCTCTCTTGGCAGGAAATTCGATATACGTGGATTTTCAATTTCTGAAGAAATACATGCCAGAATTGGCGGGTCTCTTCTCTCATGTGGTTGTTGATGTTAGTAGTGTTAAAGCTCTTTGCATTCGCTGGTATCCTAAGGATCAGAAGAAAGCACCTTCAAAAGAAAACAGACACAGAGCCATGGATGATATTAGAGAAAGCATTGAGGAACTTAGATACTACAAGGCCAACATTTTCAAGCCAAAATCCAGGAAATGATATTGTTGCTCACAATACAGCGTATGGATCTTTACGGAAGGGTTTCTAATTCAAAGTGTAAACATCAATTGTTATGGAAGGTTTATGCACCGAGCAAAATGGCTCATGATTTTGGATAGTGTACTTTGGGGTTTGTGCAGTTGTTGTAAAATCTCATTAAAATTTGCAGTAAGAGCCCTGTCATGCAAGCCAACAAAAAAAAAATGTTTTGCTCATACTATTTTATTTTATTTTTAATAATCTTGCTTATACTTTGTTGGATACTTTACCTTCAGCAAGGAGCCTTCACGTTTACAATTTATAGACTCCCAAACCGTTTGTAATTTGGATAACTCAGATCAGATGTATGGATAACATTCACATCACATCCAAATGAAAGTGCATGTTAACTGTGTTTGTTTTACAATGGAACACGTCTATAGAACATTAAACCAAACATACTCTGACTTAATAGAGGTGAACCGACATCCAACGAGGATNCTGCAATTGTGCTGTTTGCAATCAAAATGGTTATTTCCATTATCTACTTGATTTTAGAACCAAATGGAGGGAAAAAACACAAAAAAGAAGAATCTANAACATAATTTATCGAAAACCTCCTATGATATCATACTGCTGTGTACCAAGGGAATTGATCATGCTCATCATTTTCATGCTCACCAAGGTAGTTGCATACACCTGAAAACCTCATTCAATGAAACACTTAGAAACGCTATAAGCCTGTAACCTTGACTTCGTTCTTCTCCAAGTCCAGCAGTAACAAGCGACAACAACTAAGAACCAGTCCATGCTACCCAGATGAAGTAGATGACTTAAGTAGAAACAAAAAAACGTCATCCACATATCAATCAGTTCCACCAGTCAATAACGCGTCTGCGCTCATTAAGAACAGAAAAGACAATTTTTATCAGAACAGTATGCAAGAAGAAACATGGATAGTGCTGCCTTGTAAACAACTAAAACAGTTACAATTACTATTTTCTCTTTCAATGTTGTGGGGTGATGAAAAATATGGTGAACAATATCATTACCTGTTATATGCTACTTCACCTTGAATTTGACTTCACAATAACCTGCTGAGGTTCTTGATAAGCAATTTCAAATTCCTTTTCGTAGTCTCATCGCCCGTGAAACCCAGAATATCAGAGCTAATATTCTGTAGTAATACAACAAAAAATGCAACCAATAACATGGGAAAAAGTTATACATAATAATTAGATTTAGTCGGTTCCAAAAACTATGGTCAAATCAAACCTCAATGTTCTTCAAGGTAAAAATAAGTGTGTATATGGACTTCTGGATTAGTTCAGTGTTCTCCGGGGTCATAACGGATGAATGTACCCTTCTGCATACACAAAGGGTGATTTCTATTAGTTATCATACTTAAAGAGAGTTAAATTAGTCACCATACTTGGAGAATGACCTGATTGTCAAATTAAAGTACAAGAATTTTTTTAATCATATTTGTCTCATTATCTCTGTCAACTCAATCAGGATTTATCTCAAGTTAAGAGGTTACTGAGTTAGTTGCATCCCCTAACCTAATGATAATGTGTTACATGGTTATATGTATTCATTATGCATGCAAGCTAAATTAGTCATAGACAAGAGCATTAGATGTTTAGGGAATTAACCTCAAATCTTCAGAAGCTTGACTAAGGCTTCGGGTTAAATTCTCAACTTCCTTCAACAGGCCACTATCACGGACTTCAGCCAACAATGGTTGAACATCTAGTGCCATGGCTTTCATCTGAGGCATCAGTACAACAAAGNGAAAATATGGGCATGAGAATGCATCATACAAAAAAAGGTGCATATTTAAACAATATTATTTAAACAACATTATTGTTTTTAACAATTTATTTCATGTCTCAGTTTCTTTTTGTTTTCAAGTTACTCGAGACAAAAAGTATTATAGTTCTTTTTTCTTTCTTTTTTTCTTCTTTTTTTTAGATCTATTATTATAAGTATTAGATTTGCTTTATATATAAAGGGGTTTAATGGCTTTAACAGGAGCATTCAGATTTTGTTTGATAATAGAATCTTTTCTGCTACATTTCCTGCTTGTCAACTGCCACAGGAAAACCAGCACTCTATTGGCTGTGTACTACTACTAGATCTCCTAGCTCATTCTTTACTCTTCATATTCCTCGAGTGCTGTGATTTAACCCTAAGGCTGTTACCCTATACAATCAATTTTCTTACATCAGCATTTATGCTAAACAACGAAGTGTCATTCAGTAGATTCATTTCAATTTCAATTTTCAATATAATCATAAAATTGAATTCCCACAACTCCTCTTTAAAACAGAGACTTCTTATTTCTAAGGCATTAATGGACAATCTTATACTAGTTTAAGATATACCAGACTAAGATAATGTCCAAGACATCAATAATAGAAGTATGGGCAAGAGAGTAACATAGAAGAACCTAATTCTTTCATTCCTCATCATGAAATTATCCATTTTCTATTGGCAAGAAAATTGTCTGAATCAACAGTATGGTCAAGAGAATTTACTTCCATATGTCAAACACATCAGTAAAAAAATACATCACACCTGTGTAAGAAGTGGTTTTGCTTCTTCAATAACAGAAAAAACTCGTTCAGCCAATGCGTAGGTGTTGATGATACCAATTTCCTCTACATCTCGCCCAAGACGGGTGAATATCCCGACCAATGCATCCAAACTCACTCCTTGGTAACCTTTGATCTTTTCTCTATCACACACAATGAGACCTTCTTTAGCACAGTCTTGGTCAAGAGGGCCAACTGAAGGTGTTGGAATTGGATCCCGAGGAGTGATGTCAATTATAGTTTCCATAAGAAGACCTGACTGGTTAACCTCAACCAATGAATTCCGCGGTATTATTGTTTTATCATCTTCAACCTGCAATTCAAAAACTTGAATGTTTAATATCATACAATAACTAAAACAATGAATGTCAAACCAAAGCAAGCTTTCAATACTGGGATATTAGAGTCATCAATCAGATTATGGTACTGAAAGACACACCTCAACAACCGCCTCAATATTTTTTAACGAAGGATTCACACGAATGACATTGCCAACAGTGACGCCTCTAATTCTCACAGGTGTTCCGGTGCTTATACCACAAGCCTGAGCAAAATCAAAAACTGCTGTGTACTTCCGGAATTTGGATCTTATCTGGAAACCCCTCAACCAGGCCAAACTAAGTACAAATAGGACAGTACCAGATACTAAAAACAGCCCAACCCCACCTTCCCAGATGCTCCTACGACCAAACCCGAAATCACTTAATGGACGCAGTGTTTGCCTCCAAAGAGTACGAGGAATGTCCAATACAACTGAAAGTGGATTCTTTGCTTCTGAAGTAGATGACTGTTGGCTACTATGACCTGCATCAGCAGATGAAGCTTTAATCCTGTTGACTCGTGTCCGTCCTCTAATCGAAAGAGGCATGCAACTCAAAGAACTTCCGGATTGGGCAATCACACATGAAGAAAAACAAGTTGGCAATGATGAGAGATGGAGAGCAGAGTTCCCAACCATCTTCAAACCAACTTCGTTATCCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00328	123648	130997	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K13288	orn, REX2, REXO2	EC:3.1.-.-	Ribosome biogenesis in eukaryotes	map03008

Gene Ontology

molecular_function

GO:0003676 nucleic acid binding

GO:0004527 exonuclease activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000328s00018337.1	PF00929.19	RNase_T	66	231	1.50E-28

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.406
SRR1783600	control	5.234
SRR1783602	moderate drought stress	5.829
SRR1811619	moderate drought stress	5.940

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.780
DRR006520	Root Summer glycyrrhizin high producing strain	14.220
DRR006521	Root Winter glycyrrhizin high producing strain	11.662
DRR006522	Root Winter glycyrrhizin high producing strain	11.069
DRR006523	Root Summer glycyrrhizin low producing strain	13.089
DRR006524	Root Summer glycyrrhizin low producing strain	13.308
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.267
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.615

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	17.546
SRR2868004	Drought Stress (root)	18.844
SRR2967015	Control (root)	17.195

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	18.838
SRR9715740	Leaf	21.580
SRR9715741	Leaf	20.603
SRR9715739	Root	3.549
SRR9715742	Root	7.473
SRR9715743	Root	6.890

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	16.345
SRR8749028	MeJA induced 9h	13.494
SRR8749029	MeJA induced 9h	14.560
SRR8749030	Uninduced	12.061
SRR8749031	Uninduced	9.628
SRR8749032	Uninduced	8.123

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	19.479
SRR8400027	Control - Root	19.757