Gene detail

Gene detail information of Glyur000328s00018335.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G21170.1	1.00E-85	5'-AMP-activated protein kinase beta-2 subunit protein
NR	XP_004491195.1	1.60E-145	PREDICTED: SNF1-related protein kinase regulatory subunit beta-1-like [Cicer arietinum]
Swissprot	tr\|Q84VQ1\|KINB1_ARATH	8.00E-105	SNF1-related protein kinase regulatory subunit beta-1
trEMBL	tr\|Q4VYF4\|Q4VYF4_PEA	3.00E-145	SNF1-related protein kinase regulatory beta subunit 1 {ECO:0000313\|EMBL:CAI96820.1}

Sequence

Transcript Sequence

>Glyur000328s00018335.1
AAGAACAAACANCGACGGTACCATTATTTTCCTCTTCCTCCTCTTCTTCTTCTTCTTCTTCTCGCGGTACTTTTCTCACTCGCGCTCACACAATTCTCGTTCCTCCACACTGTCGTTTACCCCTCGCCTGCATTGCGAGTTCTATGTCTCCCTTTTAGTAAACGACAATATAACCACACACACCATTTCCCTTCCCGTTGTTCCATCGTTTTGTTATTTTCTTCTTTTTGAATCACACCTCTTTGTACTTTCCAATCTCTCTCCATGGGAAACGCTAACGGCAGAGAAGACGGAGCCATTGCCGGCGCCGGCGCCGGCGTCGGCGTCGGCGTCGATCCCTCCGTCCGTGTAGCTCACGCGCCTGATTCTCGTCCTCCTGTTCGTGCTTTCTCCTCCGATTCAATGGCCAATAGTCCGCCGCAGAGTCCTCGCCGCTCCAGATCGCCGATCCTCTTCGGTCCTCAGTTACTAGGTTGGAATTTCGATTTCGGTTGGTTAAATAGGTGCCTCGTCGATGTTGCTCTTCCGTGTTTCGCTATGGTTGGTTCTGTTGGTGAATTAAATGCTAATAAACATCTGGTGAATTTAATGCCTAAAGGACACTTTTCTCGAAACTGTAGAGAACCTAGAGAAAAAAAAGTTTTGTTCAGCAGTCATCCTGATCCCCGCCAGAACACCTCGCGTAGAGTTGATAGATTTCCATATCCTGTTCCTCTAGCTCCATTACAAAGNGGTAACGGCCCTCCTTTTCTCAATCAAATGTGGCAGAATGAGTCTCATGGTATTGTTAATCAACCTCCTGAGCAAGGAATCCCTGTTATGATCACTTGGAATTACGGTGGTAACAATGTGGCTGTGGAGGGATCTTGGGATAACTGGACGTCTAGGAAGGCATTGCAGCGAGCTGGCAAGGATCACTCAATTCTTATAGTTCTGCCATCAGGTATATATCATTACAGGTTCATTGTTGATGGTGAACAGAGATATATTCCAGAACTTCCTTATGTAGCTGATGAGATGGGGCATGTNTGCAATCTTCTTGATGTTAATGATTATGTGCCAGAAAACCCTGAAGGTGTCACCGANTTTGAGGCGCCACATTCCCCAGAATCTAGTTATGGTCAAGCATTTCCAGCTGAGGAAGACTTTGCAAAAGAGCCAATGGCTGTTCCTTCGCAGCTGCATCTTACCGTCCTAGGCATGGAGAACGCTGATGTTGGTCCCTCTTCAAAGCCTCAACATGTTGTGCTAAACCATGTCTTCATAGAGAAAAACTTGGCCTCCAAGTCTGTTGTTGCCCTGGGACTGACTCACAGGTTCCAGTCCAAATATGTGACAGTTGTCCTTTACAAACCACTCAAGAGGTAAAATATGTGACAGGTGTCCAGTACAAAATCCTTGTTATTCATTTTCTTTTGTTTTGTAGCCTCAGTCTGTAAAGAAATGTTTAAATAATACTCCCCCCATAGGTGATATATGAAGGTCTTGTGTCTGTAGATATGCTTGAAAGTAACTTATGCTTCTGTTTCGACTTGATACATTAAGACTTCTAGTTTTTTTTTTTCC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00328	112626	117669	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	CBM48

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0009744 response to sucrose

GO:0043562 cellular response to nitrogen levels

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000328s00018335.1	PF04739.10	AMPKBI	289	365	3.70E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	54.573
SRR1783600	control	54.248
SRR1783602	moderate drought stress	84.871
SRR1811619	moderate drought stress	83.062

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	37.057
DRR006520	Root Summer glycyrrhizin high producing strain	36.664
DRR006521	Root Winter glycyrrhizin high producing strain	39.640
DRR006522	Root Winter glycyrrhizin high producing strain	37.692
DRR006523	Root Summer glycyrrhizin low producing strain	40.170
DRR006524	Root Summer glycyrrhizin low producing strain	40.370
DRR006525	Leaf Summer glycyrrhizin high producing strain	20.819
DRR006526	Leaf Summer glycyrrhizin high producing strain	20.265

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	37.228
SRR2868004	Drought Stress (root)	65.956
SRR2967015	Control (root)	92.467

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.830
SRR9715740	Leaf	17.900
SRR9715741	Leaf	28.031
SRR9715739	Root	46.863
SRR9715742	Root	35.225
SRR9715743	Root	32.489

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	61.975
SRR8749028	MeJA induced 9h	47.470
SRR8749029	MeJA induced 9h	72.338
SRR8749030	Uninduced	57.602
SRR8749031	Uninduced	129.304
SRR8749032	Uninduced	147.086

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	31.469
SRR8400027	Control - Root	31.031