Gene detail

Gene detail information of Glyur000328s00018325

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT2G27040.2	Argonaute family protein
NR	XP_003545462.1	PREDICTED: protein argonaute 4-like [Glycine max]
Swissprot	tr\|Q9ZVD5\|AGO4_ARATH	Protein argonaute 4
trEMBL	tr\|I1M7A2\|I1M7A2_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA14G04510.1}

Sequence

Transcript Sequence

>Glyur000328s00018325.1
ATGCAGGATATGGATTTGTTTGGGTCAAATGGGAATGACAACGAGGATTCTTTGCCGCCACCACCTCCCATTGTCCCACCAGATGTTGAACCGGTCAAAGTAGAACAGGAGCTTCCCCCAGAGCCAGCTAAGAAAAAGGTTTTCAGGCATCCAATAGCTAGGCGCGGCGTGGGGTCGAAGGGAACAAAGCTGTCTCTTCTTACTAATCACTTCAGTGTTAATGTTGCTAACACCAATGGGCATTTCTACCAGTACAGTGTGTCTCTTTCTTATGAAGATGGACGCCCTGTAGAAGGGAAGGGTGTTGGGAGAAAAGTGATAGACAGAGTTCAAGAAACATATGATTCTGAATTGAACGGAAAGGACTTTGCCTATGATGGCGAAAAAACTCTGTTTACGCTTGGCACACTTGCTAGAAACAAGCTTGAGTTTACAGTTGTTCTAGAGGATGTCACATCTAACAGGAATAATGGAAACTGCAGCCCTGATGGACATGGAAGTCCAAATGAGAGCGACAAGAAGAGGATGCGACGCCCTTACCGTGCCAAGACATTTAAAGTTGAAATTAGCTATGCTGCAAAAATTCCACTGCAGGCTATTTCCAATGCCTTAAAGGGGCAGGAATCAGAGAATTTCCAAGAAGCCATAAGAGTGCTTGATATTATACTGNGGCAACATGCTGCAAAACAAGGTTGCCTGCTTGTGCGCCAAAATTTCTTCCACAATGATCCAAAGAATTTTGCAGATGTAGGAGGAGGTGTTCTTGGATGCAGAGGGTTCCATTCCAGTTTCAGAACTACACAAAGTGGCCTGTCTCTTAACATAGATGTCTCAACTACCATGGTGATTACACCTGGGCCTGTGGTGGACTTCTTAATTGCCAATCAAAATGTGAAAGATCCTTTTTCACTCGACTGGGCAAAAGCTAAAAGGACACTAAAAAATCTGAGGATTAAAACTAGCCCCTCTAATCAAGAATACAAAATTACGGGTCTTAGTGAACTCCCATGCAGGCAGCAAATGTTTACTTTGAAGAAAAAAGGTGGAAACAATGGTGANGATGAAACAGAGGAGATCACTGTTTATGATTATTTTGTGAACTATCGTAAGATAGATCTGCGTTACTCTGCTGAGCTTCCATGTATCAATGTTGGCAAACCAAAACGGCCAACTTATGTCCCCATTGAGCTTTGCTCTTTGGTATCCCTGCAACGTTATACAAAAGCACTTTCAACACTTCAAAGGTCTTCACTAGTGGAAAAGTCCAGGCAGAAGCCTAAAGAAAGGATGCAGGTTTTGTCTGATGCTCTTAAAAGTAGCAATTATGGTGCTGAACCAATGCTTCGAAATTGTGGAATTTCAATTAGCTCTGGCTTTACTCAACTTGAGGGTCGTGTTTTGCCAGCTCCAAGGTTGAAATTTGGCAATGGGGAGGATTTCAATCCCAGGAATGGTAGATGGAATTTTAATAATAAGAAAATAGTGCAACCGACCAAGATAGAAAGATGGGCTGTGGCTAACTTTTCTGCACGTTGTGATGTACGAGGGCTTGTAAGGGATCTGATTAAATGTGGAGGAATGAAAGGAATTCTGATAGACGACCCTTTTGATGTGTTTGAAGAAAATGGTCAGTTTAGGCGTGCCCCACCAATGGTTAGAGTTGAGAAAATGTTTGAGAATATTCAGTCCAAACTTCCTGGTGCTCCTCAGTTTCTCCTATGTCTGCTTCCTGAGCGGAAAAACTCTGATCTTTATGGTCCATGGAAGAAAAAGAATCTTGCAGAATTTGGAATTGTTACTCAGTGCATTGCTCCGACAAGGGTCAATGACCAGTATCTGACTAATGTTTTGTTGAAGATCAATGCTAAGCTTGGTGGCTTGAATTCAATGTTAGGTGTTGAACATTCTCCTTCCATTCCTATTGTATCCAAAGTTCCCACACTCATTCTTGGCATGGATGTATCTCATGGGTCGCCGGGGCAATCTGATGTTCCTTCAATTGCAGCGGTGGTCAGCTCTAGACAATGGCCCCTAATATCAAAGTATAGGGCATGTGTCCGTACTCAATCTCCCAAGGTTGAAATGATTGACAATTTGTTCAAGCAAGTGTCTGAAAAGGAGGATGAAGGAATAATAAGGGAACTTCTGATTGATTTCTATACAAGTTCTGGGAAGAGAAAACCGGATAATATAATCATATTCAGGGATGGTGTTAGTGAGTCCCAGTTCAATCAAGTTTTGAACATTGAACTTAGTCAAATTATTGAGGCCTGTAAATTTCTTGATGAAAAGTGGAACCCCAAGTTTTTGGTGATTGTTGCTCAGAAAAATCACCATACAAAATTCTTCCAGCCTTCGTCCCCTGACAATGTGCCTCCTGGAACTGTTATTGATAACAAAATTTGTCATCCTCGAAATTATGATTTCTACTTGTGTGCCCATGCCGGAATGATAGGTACTAGCAGGCCTACACACTATCATGTGCTGTTAGATGAGATTGGGTTTTCTCCTGATGATCTACAAGAGCTTGTCCATTCGTTATCATATGTGTATCAGAGGAGCACCACTGCCATTTCTGTTGTTGCTCCAATATGCTATGCTCACTTGGCTGCAACTCAGATGGGACAGTTCATGAAATTTGAGGACAAATCCGAGACATCTTCCAGTCATGGTGGCCTATCTGCTGCTGGTGCTCCACCCGTCCCTCAGCTGCCGAAGTTGCAGGAGAACGTCTGTAACTCCATGTTCTTTTGTTGAACCCCAATCGGAGTGTAATTGCTGTTTATAAAAACTCATCCAAACTGCTTCTTGTGGACATCGTACTTTTTTTGTATTAGACTAAAACTAAAACTTTGTTTTCCATAGGTTTGGTTTGTAAGGACTGTTAACACATGTGGAAGCATTTTTCACATGCATTCACATGTGTTCGGTCATTACTCTTTTGTGGAACGTGAACTAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00328	55991	62570	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003676 nucleic acid binding

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000328s00018325.1	PF08699.5	DUF1785	234	285	1.40E-18
Glyur000328s00018325.1	PF02170.17	PAZ	287	424	3.30E-29
Glyur000328s00018325.1	PF02171.12	Piwi	572	879	2.00E-104

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	116.517
SRR1783600	control	117.408
SRR1783602	moderate drought stress	106.856
SRR1811619	moderate drought stress	107.849

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	89.436
DRR006520	Root Summer glycyrrhizin high producing strain	88.099
DRR006521	Root Winter glycyrrhizin high producing strain	19.508
DRR006522	Root Winter glycyrrhizin high producing strain	19.057
DRR006523	Root Summer glycyrrhizin low producing strain	75.003
DRR006524	Root Summer glycyrrhizin low producing strain	74.253
DRR006525	Leaf Summer glycyrrhizin high producing strain	26.084
DRR006526	Leaf Summer glycyrrhizin high producing strain	26.499

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	141.807
SRR2868004	Drought Stress (root)	118.686
SRR2967015	Control (root)	138.265

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	49.760
SRR9715740	Leaf	44.624
SRR9715741	Leaf	59.650
SRR9715739	Root	91.501
SRR9715742	Root	146.468
SRR9715743	Root	137.934

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	136.891
SRR8749028	MeJA induced 9h	102.594
SRR8749029	MeJA induced 9h	101.751
SRR8749030	Uninduced	19.228
SRR8749031	Uninduced	22.490
SRR8749032	Uninduced	37.308

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	185.065
SRR8400027	Control - Root	177.397