Gene detail

Gene detail information of Glyur000327s00026470

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G28260.1	0	cyclic nucleotide-gated channel 15
NR	XP_004497513.1	0	PREDICTED: putative cyclic nucleotide-gated ion channel 15-like [Cicer arietinum]
COG	YP_006439308.1	4.00E-25	putative transcriptional regulator, Crp/Fnr family [Turneriella parva DSM 21527]
Swissprot	tr\|Q9SL29\|CNG15_ARATH	0	Putative cyclic nucleotide-gated ion channel 15
trEMBL	tr\|G7IBJ4\|G7IBJ4_MEDTR	0	Cyclic nucleotide-gated ion channel-like protein {ECO:0000313\|EMBL:AES60733.1}

Sequence

Transcript Sequence

>Glyur000327s00026470.1
ATGACTTTTGGTAGATCAAAATCTGTAAGGTTTCGTGATGATGATCTTGAACTAGAGAAGTTAAAGGAAAGACAAGAAAGTGACTTGTCGATGAGAGCCTATGAGATGGGTGGCCAACAACCGAAGCCAAGGAAGGATGCAATAGACAAGTCATTGGGTGGAAGAGAACTTTCCAGGGTCTTCTCTGAAGATTATGATGCAGCAGATGTGTTGATATTGGATCCTAGGGGACCTNGAGTAAATAGATGGAACAAGATTTTCTTAGCAGCTTGTTTTGTTTCATTGTTTGTGGATCCTCTATTCTTTTACTTGCCAGTGGCTACAAAAGACAAGTGCATTGATCTGTCTGTTGGTCCTGAAGTATCCCTTACCATAATAAGGACAATGGTTGATGCATTTTACATTATTCAGATTTATTTTCGGTTTCAAACAGCGTATATTGCTCCTTCCTCTCGCGTTTATGGTAGAGGAGAACTTATTATAGACCCCTCGAAGATTGCATCGAACTACCTGCGTAAAGACTTTTGGATTGATCTAGTGACTGCACTACCACTTCCACAGGTACTGGTTTGGGCTGTAATTCCTAATCTGAGGGGGCCACAAATGATTGCTTCAAGGCATGTCGTGCGCCTTGTGAGCATTTTCCAGTACCTCTTGAGATTGTATCTTATCTATCCTCTATCATCNGAAATCATCAAGGCAAATGGGGTAATGATGGAAAAAGCTTGGGCTGGAGCAGCATATAATTTGAGTCTCTATATGTTGGCAAGTCATTATCCACACTGTCAGTATCATTATCTTGAATGTCAAAGCATAGGTGACCCAGATAGGACTGCTTGGTTCAGATCAAGCAATATCTCAGGTTTATGTGATCAGAACAGTGATTTCTTTCAGTTTGGCATTTTTGCTGATGCTCTGACTTTGGAAATCACGGGCTCAAATTTCTTCAACAGATACTATTATTGTCTTTGGTGGGGACTGAGGAATCTAAGCTCTTTAGGACAGAATCTCTTAACAAGCACACATGTTGCAGAGATNAATTTTGCTGTGATCGTTGCAATTCTTGGATTGGTGCTTTTTGGACTGCTCATAGGCAATATGCAAACTTACCTTCAATCNACCACTATGCGACTAGAAGAGTGGAGAATAAGAAGGACAGACACAGAGAGATGGATGCATCACAGGCAGCTCCCTCGTTACCTGAAGCAAAACGTGCGACGCCATGACCAATTCAGATGGGTCGCTACTCGAGGAGTAGACGAGGAAGCTATNCTCAGAGACCTTCCCGTGGATCTCAGACGTGACATTAAACGCCATCTTTGCCTTAATCTTGTCAGACAAGTACCACTATTTAATCAGATGGATGACGTGATGCTAGATGCAATATGTGAAAGGCTGAAGCCTTTTCTGTGCACTCCAGGCACATGCCTAGTTCGTGAAGGTGACCCTGTCAATGAGATGCTCTTCATCGTCCGAGGACACCTAGATTCTTGTACAACCAATGGTGGAAGAACTGGTTTCTTCAACTCCTGTAGAATAGGCTCTGGTGACTTCTGTGGTGAGGAGCTTTTGCCGTGGGCCTTNGACCCTCGCCCAACAGTTGCTCTTCCATCCTCAACCCGCACGGTNAAGGCCATCACTGAAGTTGAGGCCTTTGCACTCATTGCTGAGGACTTGAAGTTTGTGGCTACCCAATTCAGAAGGTTACACAGCAAACAACTCAGGGACACTTTCAGGTTCCATTCCCATCAGTGGAGGACTTGGGCTGCATGCTTTATACAAGCTGCATGGTTCAGGTATAAGAGAATGAAAGAGACCAGTGAGCTCAAGAAAAGGGAGAGCCTGATGATGATGATGATGGCCCATGGGCCNGGAACTGATGACACTCAGCATTTCTCTGCACCTCTTCAGGGCCCAATGGGCTCAAGTCTTTCGATGAATTATCCGAAATTGGTAGATAGCCCAAGGAGAGGTAGGAGCTTGAGATATGGGTCTCAGCTTGACTTTTTTGGTTCAATAAGGAAGCCCCTTGAACCAGACTTCAATCATCATGATAATAATAGTTAAGAGCATTAAGTTGTCCATTTGGAGAAGGCGTACTGATCAGTCTGGACTATTAGTAGAGTGAAAAATGTTAACAACACACTATCTGACACACTCTTTCTAAGACACTCTATGATTGGCTGCAATTCATGTGAGTTCCACTATTTTGGGAATGAGTCTCACCAAATAGGGTATTGACACACATGATTTAGTGGGACACCCACATGAATTCCATCCAATTATAACGAGTGTGTTGCTAGTATTTCTCAAAGTGAGGGTATGTGCTACTTGTCAGTTATTAGTTATAGTTATTATAGTAAAGTGTTGTAAGCCACTAAAAGATTGTACCAGTGACATATGTTCAAATCTTATTGACATCACTGTACAAAAAAAAACTTTGTAAGTATGAAGTGGCACCAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00327	162273	168295	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006811 ion transport

GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0005216 ion channel activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000327s00026470.1	PF00520.26	Ion_trans	126	367	9.70E-10
Glyur000327s00026470.1	PF00027.24	cNMP_binding	472	565	1.30E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.044
SRR1783600	control	0.060
SRR1783602	moderate drought stress	0.185
SRR1811619	moderate drought stress	0.188

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.329
DRR006520	Root Summer glycyrrhizin high producing strain	0.310
DRR006521	Root Winter glycyrrhizin high producing strain	1.360
DRR006522	Root Winter glycyrrhizin high producing strain	1.400
DRR006523	Root Summer glycyrrhizin low producing strain	0.112
DRR006524	Root Summer glycyrrhizin low producing strain	0.134
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.695
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.857

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.172
SRR2868004	Drought Stress (root)	0.230
SRR2967015	Control (root)	0.163

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.961
SRR9715740	Leaf	4.630
SRR9715741	Leaf	3.133
SRR9715739	Root	0.038
SRR9715742	Root	0.105
SRR9715743	Root	0.099

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.269
SRR8749028	MeJA induced 9h	0.101
SRR8749029	MeJA induced 9h	0.304
SRR8749030	Uninduced	0.059
SRR8749031	Uninduced	0.085
SRR8749032	Uninduced	0.250

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.218
SRR8400027	Control - Root	0.115