Gene detail

Gene detail information of Glyur000327s00026468

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G37220.1	1.00E-76	RNA-binding (RRM/RBD/RNP motifs) family protein
NR	XP_004497514.1	5.17E-153	PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like isoform X1 [Cicer arietinum]
COG	YP_003797161.1	2.00E-19	RNA-binding protein [Candidatus Nitrospira defluvii]
Swissprot	tr\|Q9ZUU4\|CP29B_ARATH	1.00E-100	RNA-binding protein CP29B, chloroplastic {ECO:0000305} (Precursor)
trEMBL	tr\|G7IBJ3\|G7IBJ3_MEDTR	4.00E-132	Uncharacterized protein {ECO:0000313\|EMBL:AFK39649.1}

Sequence

Transcript Sequence

>Glyur000327s00026468.1
CTTATCGAAATGCATTCTCTCATTCCAACCTTTCCTTTCCCTTGCATAAATATCCCATTCCCTCACTCTGAAATCGAATCCTCACTCTTCTTCACAACACACTAAACCCTATTTTTTGGTTGTTGCCTCGAAACCTTATCCGTTATCCTTAAACCATGTCTACTACAGCAGCTTCTCTAGCACTTCCCACTCTCCNAACCCGAAAANCTCTTTGTTCTTCACCTCAATGTCTCTCTTCTCGGTTTTCTCTCAACCCTAACTTCAAGCCCTTCTCCATTTCCTCTGCTTCTCTTCGTCNAACGTTGTCGCTGTCGTGTCGTTTCGTTTCCCGTGTNGCACTTTCCTCTGAATTCGACCAGGAAGAGGATACCTTTAGCGATGGAGACACCCCCAACTACTCTCGTGACCTTAGGCTCTTCGTGGGTAACCTTCCTTTCAGCGTTGACAGTGCCCAACTCGCTGAGCTCTTCGAAAACGCTGGGAATGTGGAGATGGTTGAGGTTATTTATGATAAAATGACTGGGAGAAGCAGGGGATTTGGTTTTGTTACCATGTCTTCGGCTGAGGAAGTTGAAGCAGCTGCTCAGCAGTTCAATGGCTATGAACTGGATGGAAGGCCATTGAGAGTGAATGCTGGACCACCTCCTCCTCGGACCGAGAATTCTCGTTTTGGAGGTCCTTCCAGGGGTCGTTCTCCTTCGGATAATGAAAACCGTGTTCATGTCGGTAATCTTGCTTGGGGTGTTGACAACTTAGCACTTGAGTCNTTGTTTCGTGAACAAGGAAAGGTTGTGGAAGCAAAGGTTATCTATGACAGGGAAAGTGGAAGATCNAGAGGCTTTGGATTTGTGACTTTCAGTAGTCCTGATGAGGTCAACAGTGCTATTCAGTCCTTAGATGGCGCGGACTTGAATGGCAGAGCTATACGAGTCTCATTAGCAGATGGTAAACCCAAGCGTCAATTTTGAGGATTTTACCTTTCATATATACCTGATCAAGAGAGGACTTGGGTAGTTGGGAGTTATGTGGCTGCAAATCATTGATGTTTTCCGACAGTTTGNGAAAGAATGCACTCAATACGCGGCATTTACATACAGTAGCAGTACCTAACAGGCTGCTTGTTGGAGAAGAGAGCTAATACTCTCGTGAAAGCCTAAAAGTATGCTCCGGATTTGATAGTTTTTGTTTGAAGCTGATTTTTAGTCTGTATTTTACTGCTTTGCTATTGAAGTAGACGACTCGATATTTATGGGTTTACCCCGTTCCAACTTCCCAGCGATGTTGTGGAAGAATTTTATTATCGCAAATGTGCTTGGAAAATTATCAAACCACAAATTTATTTTATAGTTTACTTGTTAAGTGGGAAGAAATTATGTGATTTGTGCATCATGTGATACCTNTTTAGGTTTCATGATGAGGTAAATGGCCTAGAATTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00327	157885	160626	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0000166 nucleotide binding

GO:0003676 nucleic acid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000327s00026468.1	PF00076.17	RRM_1	87	157	9.10E-21
Glyur000327s00026468.1	PF00076.17	RRM_1	189	258	4.10E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	97.733
SRR1783600	control	97.545
SRR1783602	moderate drought stress	89.890
SRR1811619	moderate drought stress	87.983

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	111.833
DRR006520	Root Summer glycyrrhizin high producing strain	109.912
DRR006521	Root Winter glycyrrhizin high producing strain	75.555
DRR006522	Root Winter glycyrrhizin high producing strain	73.690
DRR006523	Root Summer glycyrrhizin low producing strain	82.462
DRR006524	Root Summer glycyrrhizin low producing strain	82.295
DRR006525	Leaf Summer glycyrrhizin high producing strain	883.207
DRR006526	Leaf Summer glycyrrhizin high producing strain	878.410

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	82.136
SRR2868004	Drought Stress (root)	55.892
SRR2967015	Control (root)	69.326

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	278.057
SRR9715740	Leaf	533.654
SRR9715741	Leaf	240.767
SRR9715739	Root	73.693
SRR9715742	Root	74.770
SRR9715743	Root	69.843

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	58.351
SRR8749028	MeJA induced 9h	31.743
SRR8749029	MeJA induced 9h	26.587
SRR8749030	Uninduced	7.823
SRR8749031	Uninduced	3.251
SRR8749032	Uninduced	4.386

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	130.565
SRR8400027	Control - Root	112.134