Gene detail

Gene detail information of Glyur000327s00026463

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G03280.1	0	NRAMP metal ion transporter family protein
NR	XP_003542536.1	0	PREDICTED: ethylene-insensitive protein 2-like [Glycine max]
COG	YP_826856.1	1.00E-54	Mn2+/Fe2+ transporter [Candidatus Solibacter usitatus Ellin6076]
Swissprot	tr\|Q9S814\|EIN2_ARATH	0	Ethylene-insensitive protein 2
trEMBL	tr\|K7LZS3\|K7LZS3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G20810.4}

Sequence

Transcript Sequence

>Glyur000327s00026463.1
CTTACCATAATTTTAATTTTCTTTTTAACTTTCTCTCTCTTCTTTCTTTTCCCGGAAAATCGAGCTCGCTCGCTCGCTCGCTGTCTCTTTCTCTCTCTCCGAACACACACATAAGAGTGAATAGCANAGCACATAACATAGCAGAGAAAGAGAGACTCGTGGCAGATGAAAAGAAAAATTTCAGAGAAAGGATTCGGAAAGTCCTAGGTGGAAGTGGTTGGATTTTTCAGGGGGGGATGGTTTATACTTTATTGGATTAGAATTGAGAGTCTTAAAGGGGATTTGAGAATTTTGGGATGAATTGGATGTTGACATTTNAGTCATGTTGAGGAGATGAATAAAATTATTGGTGAGGTATGCAGGTTGACTTTATCCAAAGCATCAGATTTGTATCTGATGATCACAGTTAATGTTCGAACATTGTAGGCTGTTCACTGNTGCACACGGAGAAGCTAGTTGTTGAATCGTTGCGAGTGTCTGCAACTGGTCCTTGTCTTTCAATCCTCCTGCTTACTACAGTTAATGTTTCAAGCTGCTAACGTCTCGACGAATGAATGACTTGTGAATTGTTAGCAGATGGAGTATTTTGCTAGTAATATACTTAACTAGCGGCAGTATAATTTATGGCTCACTGAGAGTTTTTGCTACTTCTAAGTGTTTCCTCTCTAAGTATCATAATTTGCCTGTAGCCTTTAGTCTTGGTGGCACTAAAGAGTAAAATGGAAGCTGAGACTTTGAACATTAATCNTGCTCCCAGTTTTGTTCACCGGTCACTTCCTGCTGTTGTACCTATGCTTATGATTGCAATAGGATATGTTGACCCTGGGAAGTGGGTGGCAATTATTGAAGGTGGTGCACGGTTCGGGTTTGACCTGATGGCNTTCACACTTATTTTCAACTTTGCAGCTATCTTCTGTCAGTACATATCAGCAAAAATTGGTGTAATCACAGGAAAAGATCTTGCCCAGATTTGCAGGGATGAGTACGATAATTGGACTTGCATGCTCCTTGGAGTTCAAACAGAACTTTCGGTGGTTGTGCTAGACCTCAACATGGACATTGAGAAGGTGAAGATCCTAGGCCTGTTTGTGGCAGGTTTTGTATTGCTTTCTTTTGTACTTGGAATACTCATTAATCAACCAGAAATTCCATCCATTAGTGGAATACAAACAAAGTTGAGTGGAGAGAGTGCATTTGTGCTAATGAGTCTTCTAGGAGCAACTCTTGTCCCTCATAACTTTTACCTTCATTCCTCTATTGTACAGTGGCATCAGGGATCAACAACCATCTCTAAGGATACCTTGTGTCATAACCATTTTTTGGCCATCATATGTGTCTTCAGTGGCCTTTATTTGGTAAATAATGTGCTGATGAATGCTGCAGCAAATGAGTTCTACAGTATGGGTCTTGTTTTGACTACTTTTCAGGATGCGTTATCGCCAATGGAACAGGTGTTGCGCAGTCCGATAGCGCTGCTTGCATTTTTACTTTGTCTGTTTCTTTCAAATCAAACCACAGCATTAACTTGGAGTTTAGGTGGAGAAGCAGTTGTGCATGGTTTCTTAAAATTGGATATCCCGGGTTGGCTTCATTATGTCACAATTAGAGTAATTGCTGTTCTGCCTGCCCTTTATTGTGTTTGGAGTTCAGGAGCTGAAGGGATGTATCAATTACTTATATTCACTCAGGTTTTGGTAGCTCTGCAACTTCCATCTTCTTTGATCCCCCTTTTTCGAATAGCTTCATCTAGATCAATAATGGGTGTACACAAGATCCCTCAATTTGCNGAATTTTTGGCATTGATAATATTTATTGGGATGCTTGGCTTGAATATTATCTTCGTTGTAGAAATGATATTTGGCAGTAGTGATTGGGTGGGAAATTTGAGATGGAATGCAGGGAATGGTGTGTCTCTTTCTTATTTAGTTCTTCTTTTCTCTGCTTTTGCATCATTCTGTTTGATGCTTTGGTTAGCTGCCACGCCTTTAAAATCTGCNAGTGTCCAATTAGATGCTCAGGCATGGAATTGGGACATGCCAGAGGCCNTACCAAATCCACAGATTGGTAATGAGGAATCAGATTTGACTGAAACAAGGTATCATGGAGATGCATCTGCTCAGGTAAACGAACCATCACCAGCTCCAGCAAGGACCTTGGAATGNTCAGATGTTCCAGTTGCAAGTTTTCATCCTGATCTACCTGAAACCATCATGGAGCCTGATCTTCATGTGACTAGTGTAAGGGAGACTCCTTCAATTACATCATTTCCTTGTTCCCCAAGATCTGTTGTTAAAGAATCAGCTTCCACATCAGAATCAGAGGCNGTACCAGCTGTAATTAATGAGACTTCTGATATTAGATTTGGAGATGCCAAAACTTTGAAAATAGAAACAACTGCTTCAGTTGAGAAAACTGTTGAAGTTGAGGGAGATTCAAGTGCTGAAAGGGATGATGATGATGGGGACTCATGGGAAACTGAAGAAGCATCCAAAGTGGTCTCAGCAACTGCCCCATCTTCAGCATCAGATGGCCCAGCATCATTCAGGAGCCTTAGTGGGAAAAGTGATGATGNGGGAAATAGCATTGGAAGTCTTTCAAGATTAGCAGGCTTAGGGCGTGGTGCAAGGCGTCAGTTAGCTGCTATTCTTGATGAATTCTGGGGACAACTTTATGATTTCNATGGGCAAGTTACCCAGGAAGCTAAGGCTAAGAGACTAGATGTTGTACTTGGAGTAGATTCAAGACTCACTGGTTCCTTGCAGAAAGTGGATGCATGTGGAAAAGAATATTNTGACTACTTAATATCTGTAGGAAGCAGAGCTCCTGATACTATAATGAACTCTGCTCCGTACGACTCTCCCAAGCTGCATAGGATGCAAAGTAATTTAGAGTCTTCNTATGGGCTTCAAAGAAATTCTTCCTCACTGCNGACAAATCCCATCCAATTATTAGATGAATATGCACAGCATTCCAGCCGCAATCTCCTTGATGCTGGTGAAAGGCGCTATTCCAGTGTGCGCAATCTGCCTTCATATGGAATTTGGGATTATCAGCCAGCTACAATGCCTGGTCATCAGATTACATCGTATATTAGCCAGGTNGGTAAAGACAAAACTTCTGACAACTTAAATGGTCCGATGGAAGTNTCTCCAATGAAATCCCCTTCCATGGGTAATACAAACTACAGGAATTCCATCGCACTTGCTTTGGGACAAAAGTTGCAGAATGGTTCAGGCATAGGCCACCCCCCAGGGTTTCAAAACATTCCTNTCTCTATGAATTGCCAATTGCCATCTGAGAGGTCCTATTATGATTCTCGCCCTTCTGGACCTACAAATAATGCAGTTGGTTCAGTTAATACTAAGAAGTACCACAGCTTGCCAGACATTTCAGGATATGCTGTCCCTCACAGAGATGTTTACATGTCTGATAAGAGTCACCCATGGGATGGTTCTGTTGGTGGATATGGATCTTCTGCAAGTAGGACTCNTTATGAACCATCATTATATTCAAATTCTGGATCAAGGACAGGAGCTCCTTTAGCCTTTGATGTACTCTCTCCATCAAAAGTCTACAGAGATGTACTTTCTTCTCAGTTGAGTTCTGGTTATGGTACTGGATCCCTCTGGTCCAGACAGCCTTTTGAGCAGTTTGGGGTGGATGATAGAATTCATAATGCTGCAACAGAAGATGCTGGAAGTAGGCCTAGTGCCACTGCCCAAGAGACTACTTCAGTTGTGGATATAGAAAACAAACTTCTTCAATCTTTTAGACATTGTATTGTGAAGCTCTTAAAGTTGGAAGGGTCTGATTGGTTGTTTAGACAGAATGATGGGGCTGATGAGGATCTGATTGATCGTGTAGCTGCAAGGGAGAAATTCATTTATGAAGTTGAAATGACGGAGATGAATCGGGTCAATAATATGGGAGAAGCTCAATATTTTTCTAAGTCTGGTTCTTCAGTGAAGTATAATGAGGTAAATTACTCTAGTTTCTCTGTCTCCTCAATCCCTCACTGTGGAGAGGGATGTGTATGGAGAGCAGACCTAATAACAAGCTTTGGGGTGTGGTGTATCCACCGTGTCCTCGACCTCTCACTTATGGAGAGCCGGCCAGAGCTTTGGGGAAAATACACATATGTGCTCAATCGCCTCCAGGGTGTCATTGATCTGGCCTTTTCCAAGCCTCGTNGTCCCTTGGCTCCATGCTTTTGCCTTCAAGTTCCCATGTCACACCAGCAAAAGTCAAGCCCTCCTTCTTCCAACGGGATGCTTCCCCCTGCTGCAAAACCAGGCAGGGGAAAATGCACNACTGCATCAATGGTGCTTGATATGGTCAAGGATGTCGAGATTGCAATCTCTAGCCGGAAAGGTCGTACCGGAACTGCAGCCGGTGANGTGGCTTTCCCAAAGGGAAAGGAAAATTTGGCATCTGTCCTCAAACGGTACAAACGTAGATTATCCAACAAACCANTTGGCACTCATGAAGGGATTCGCAAGATTCCCACAACAGCACCATACAACTTGTAGCATATAGCCTTTCAATATATGATTTAACAAAACGCAGTGTTCCTTGGGCTGTTTTGTTTTGTGAAGCAGTTCATGGCTGTAAATCAAGGGTTGCTGTCTCCGTGTACCAAATTCCTTGCAGCAGATTTTATTTCTTTGTATGTTACATACACATAGGGTTAGAATTAATATATGTAATTGCAACAAAATCAAAGGAAAAAAAATGGTTAAGACGGAAACTGACTTCCACCATCACACCATGTTGGCTTAATTTTCATTACTTCATCTATATAGCAAGTGCATTGAAGGTTAGGAAACAAAATGAAAAACATTGTTGACAANTGATCATCAAAAC

Protein Sequence

>Glyur000327s00026463.1
MEAETLNINXAPSFVHRSLPAVVPMLMIAIGYVDPGKWVAIIEGGARFGFDLMAFTLIFNFAAIFCQYISAKIGVITGKDLAQICRDEYDNWTCMLLGVQTELSVVVLDLNMDIEKVKILGLFVAGFVLLSFVLGILINQPEIPSISGIQTKLSGESAFVLMSLLGATLVPHNFYLHSSIVQWHQGSTTISKDTLCHNHFLAIICVFSGLYLVNNVLMNAAANEFYSMGLVLTTFQDALSPMEQVLRSPIALLAFLLCLFLSNQTTALTWSLGGEAVVHGFLKLDIPGWLHYVTIRVIAVLPALYCVWSSGAEGMYQLLIFTQVLVALQLPSSLIPLFRIASSRSIMGVHKIPQFAEFLALIIFIGMLGLNIIFVVEMIFGSSDWVGNLRWNAGNGVSLSYLVLLFSAFASFCLMLWLAATPLKSASVQLDAQAWNWDMPEAXPNPQIGNEESDLTETRYHGDASAQVNEPSPAPARTLEXSDVPVASFHPDLPETIMEPDLHVTSVRETPSITSFPCSPRSVVKESASTSESEAVPAVINETSDIRFGDAKTLKIETTASVEKTVEVEGDSSAERDDDDGDSWETEEASKVVSATAPSSASDGPASFRSLSGKSDDXGNSIGSLSRLAGLGRGARRQLAAILDEFWGQLYDFXGQVTQEAKAKRLDVVLGVDSRLTGSLQKVDACGKEYXDYLISVGSRAPDTIMNSAPYDSPKLHRMQSNLESSYGLQRNSSSLXTNPIQLLDEYAQHSSRNLLDAGERRYSSVRNLPSYGIWDYQPATMPGHQITSYISQVGKDKTSDNLNGPMEVSPMKSPSMGNTNYRNSIALALGQKLQNGSGIGHPPGFQNIPXSMNCQLPSERSYYDSRPSGPTNNAVGSVNTKKYHSLPDISGYAVPHRDVYMSDKSHPWDGSVGGYGSSASRTXYEPSLYSNSGSRTGAPLAFDVLSPSKVYRDVLSSQLSSGYGTGSLWSRQPFEQFGVDDRIHNAATEDAGSRPSATAQETTSVVDIENKLLQSFRHCIVKLLKLEGSDWLFRQNDGADEDLIDRVAAREKFIYEVEMTEMNRVNNMGEAQYFSKSGSSVKYNEVNYSSFSVSSIPHCGEGCVWRADLITSFGVWCIHRVLDLSLMESRPELWGKYTYVLNRLQGVIDLAFSKPRXPLAPCFCLQVPMSHQQKSSPPSSNGMLPPAAKPGRGKCTTASMVLDMVKDVEIAISSRKGRTGTAAGXVAFPKGKENLASVLKRYKRRLSNKPXGTHEGIRKIPTTAPYNL

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00327	122250	131025	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006810 transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0005215 transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000327s00026463.1	PF01566.13	Nramp	38	111	7.70E-20
Glyur000327s00026463.1	PF01566.13	Nramp	115	352	7.30E-50
Glyur000327s00026463.2	PF01566.13	Nramp	38	111	7.70E-20
Glyur000327s00026463.2	PF01566.13	Nramp	115	352	7.30E-50

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	21.773
SRR1783600	control	21.583
SRR1783602	moderate drought stress	26.096
SRR1811619	moderate drought stress	25.856

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	22.942
DRR006520	Root Summer glycyrrhizin high producing strain	22.708
DRR006521	Root Winter glycyrrhizin high producing strain	37.447
DRR006522	Root Winter glycyrrhizin high producing strain	36.334
DRR006523	Root Summer glycyrrhizin low producing strain	22.391
DRR006524	Root Summer glycyrrhizin low producing strain	22.364
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.311
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.334

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	37.719
SRR2868004	Drought Stress (root)	41.523
SRR2967015	Control (root)	42.782

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.068
SRR9715740	Leaf	18.281
SRR9715741	Leaf	18.194
SRR9715739	Root	6.724
SRR9715742	Root	27.907
SRR9715743	Root	22.019

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	18.382
SRR8749028	MeJA induced 9h	24.898
SRR8749029	MeJA induced 9h	10.513
SRR8749030	Uninduced	13.853
SRR8749031	Uninduced	10.383
SRR8749032	Uninduced	10.148

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	32.364
SRR8400027	Control - Root	31.618