Gene detail

Gene detail information of Glyur000327s00026461.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G37040.1	0	PHE ammonia lyase 1
NR	AAX84839.1	0	phenylalanine ammonia-lyase [Astragalus mongholicus]
COG	YP_007127054.1	9.00E-85	histidine ammonia-lyase [Gloeocapsa sp. PCC 7428]
Swissprot	tr\|P27991\|PAL1_SOYBN	0	Phenylalanine ammonia-lyase 1
trEMBL	tr\|Q52QH3\|Q52QH3_ASTMO	0	Phenylalanine ammonia-lyase {ECO:0000256\|RuleBase:RU003955}

Sequence

Transcript Sequence

>Glyur000327s00026461.1
CACCTTCTTTTATATAATGCCCCATTCTCTCTCCCTCTTCCCCTCAGGAAATCCTTTGATTCCCCCCACAACCAAAGATTTCCTCTCCTCTCATCAACTACTACAACTATTATTATTATTATTATTATTACTACTACTACTACTCTCTCCTCTCCCTTCTCTATCTCTTCAGCATTCCTTAAATACATTTTTACTCTCTTTTCGTCGTGACAATTCATCAAACATGGACGCTACTACAGCCAATGGCCATGTCGTCGACGGTGTCAATAGTTTTTGCTTGAAGAGCGGTAGTGGTGGTGGTGATCCATTGAACTGGGGTGCGGCGGCGGAGTCGATGAAGGGGAGTCACTTGGACGAGGTGAAACGGATGGTGGCGGAGTACCGGAAGCCGGTGGTGCGGCTCGGCGGCGAGAGCCTCACGATTGCTCAGGTGGCCGGCATCGCCTCACACGACACCGGCGTACGTGTGGAGCTGTCGGAGTCGGCGAGGGCAGGGGTTAAGGCAAGCAGTGACTGGGTGATGGACAGCATGAATAATGGCACCGACAGCTACGGTGTCACCACCGGTTTCGGTGCTACCTCCCACCGTAGAACCAAACAGGGCGGTGCCTTGCAGAAGGAGCTAATTAGGTTTTTGAATGCTGGAATATTTGGCAATGGTACGGAGTCAAATTGCACCCTACCACACACAGCAACAAGGGCAGCAATGCTAGTGAGAATCAACACCCTTCTTCAAGGCTACTCTGGCATTAGATTTGAAATCTTAGAAGCCATGACAAAGTTCCTAAACAGCAACATCACCCCATGCCTACCACTNAGGGGAACAATTACAGCATCTGGTGACCTTGTCCCTCTTTCTTACATTGCCGGTTTGTTAACGGGCAGACCCAATTCNAAAGCTGTGGGACCCACTGGAGAGATTCTCAATGCCAAGGAAGCATTTCAATTGGCCAAAATTGGTTCAGANTTCTTTGAATTGCAACCCAAAGAAGGCCTTGCACTTGTTAATGGCACTGCCGTTGGTTCTGGTTTGGCTTCAATCGTTCTGTTTGAAGCAAACATTCTAGCTGTTTTGTCTGAAGTTATATCAGCAATTTTCGCTGAAGTTATGCAAGGGAAACCTGAATTCACTGACCATTTGACACATAAACTGAAACACCATCCTGGGCAAATCGAAGCTGCAGCTATTATGGAGCATGTTTTGGATGGAAGCTCTTATGTTAAAGCAGCTAAGAAGTTGCATGAGGTTGACCCTTTACAAAAGCCTAAACANGATCGCTATGCACTTAGGACTTCACCACAATGGCTTGGTCCTTTAATTGAAGTGATAAGGTTCTCAACTAAGTCAATTGAGAGAGAGATTAACTCGGTCAATGACAACCCTTTGATTGATGTGTCAAGGAACAAGGCTTTACATGGTGGTAACTTTCAGGGAACACCTATTGGGGTCTCAATGGATAACACACGTTTGGCACTTGCTTCAATTGGTAAACTCATGTTTGCTCAATTCTCTGAGCTTGTTAATGATTTTTACAACAATGGGTTGCCTTCGAATCTCTCTGGTGGTAGAAACCCAAGCTTGGATTATGGTTTCAAGGGAGCTGAAATTGCTATGGCTTCTTATTGCTCTGAGCTACAATACCTTGCAAACCCGGTTACAAGCCATGTACAAAGTGCTGAACAACACAACCAGGATGTGAACTCNTTGGGTTTGATTTCTTCTAGGAAAACAAACGAGGCCATTGAGATCCTNAAGCTCATGTCTTCCACGTTCTTGATTGCACTCTGCCAAGCTATTGACTTGAGGCACTTGGAGGAGAACCTGAAGAACACNGTCAAGAACACCGTGAGCCAAGTTGCCAAGAGGACACTCACCACAGGTGTCAATGGAGAACTCCACCCTTCTAGATTCTGTGAGAAAGACTTGCTCAAGGTTGTTGATAGGGAGTATGTTTTTGCNTACATTGACGACCCTTGCAGTGCCACGTACCCATTGATGCAAAAGCTGAGGCAAGTGCTTGTGGATCATGCACTTGTAAATGGAGAGAGCGAGAAGAGCTTGAACACATCGATCTTCCAAAAGATTGCAACTTTTGAGGATGAGTTGAAGGCCCTTTTGCCAAAAGAGGTGGAAGGTGCGAGGGTTGCATATGAGAATGGGCAATGTGCAATCCCGAACAAGATCAAGGAATGTAGGTCATACCCGTTGTACAAGTTTGTGAGGGAAGAGTTGGGGACAGGGTTGTTAACAGGGGAGAAGGTGATTTCACCGGGTGAGGAGTGTGACAAACTGTTCATAGCAATGTGCCAGGGTAAGATTATTGATCCCCTTTTGGAATGCCTTGGGGAGTGGAATGGTGCACCTCTTCCAATTTGTTAAAGGCTCAATCCAGGGTTTTAAATTGTGGTCCACAACTGTAATAGCGGCCGCCACATCAAGGTTTTAAAAGTCTCCAAAACGTATTGGCTGCATCTGTTCGTAATATCCAACAATATCAAGATTTTTAGAGTCTCCAATATCGAAACTCCTGCGACTACAATTTAAAACCATGGCTCAATCTGTTTCTTTGAGGAAGTGGTTTCTTTTCGTTTATGTCTGTGCTTGTATTGAGAAGCAATTTGGTTTGTCTGTATAAGCCTTTGGCAAATCAATATCCAGACCGCATCGTTTGTAGTTTTCCTTGGTGTTATAAGGAACTTGTAGTTGATATATTGTAATAGAATTTCATTTCATTTGTTTCCCGTAGCTTTGGGGGTGCAGATAAGATACATGATCTTTGATGTAAATGATGTTTTCCCGTGAATAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00327	86043	91031	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K10775	PAL	EC:4.3.1.24	Phenylalanine metabolism	map00360
			Phenylpropanoid biosynthesis	map00940

Gene Ontology

biological_process

GO:0006559 L-phenylalanine catabolic process

GO:0009058 biosynthetic process

cellular_component
GO:0005737 cytoplasm

molecular_function

GO:0003824 catalytic activity

GO:0016841 ammonia-lyase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000327s00026461.1	PF00221.14	Lyase_aromatic	127	619	1.20E-172

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	150.951
SRR1783600	control	150.121
SRR1783602	moderate drought stress	114.568
SRR1811619	moderate drought stress	113.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	35.805
DRR006520	Root Summer glycyrrhizin high producing strain	34.930
DRR006521	Root Winter glycyrrhizin high producing strain	0.554
DRR006522	Root Winter glycyrrhizin high producing strain	0.465
DRR006523	Root Summer glycyrrhizin low producing strain	20.559
DRR006524	Root Summer glycyrrhizin low producing strain	19.562
DRR006525	Leaf Summer glycyrrhizin high producing strain	120.501
DRR006526	Leaf Summer glycyrrhizin high producing strain	118.359

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	456.222
SRR2868004	Drought Stress (root)	446.767
SRR2967015	Control (root)	434.952

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	327.025
SRR9715740	Leaf	296.095
SRR9715741	Leaf	363.099
SRR9715739	Root	351.851
SRR9715742	Root	486.690
SRR9715743	Root	449.709

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	46.986
SRR8749028	MeJA induced 9h	108.269
SRR8749029	MeJA induced 9h	20.332
SRR8749030	Uninduced	297.740
SRR8749031	Uninduced	161.078
SRR8749032	Uninduced	90.358

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	346.224
SRR8400027	Control - Root	250.054