Gene detail information of Glyur000326s00025801 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G49260.3 | 2.00E-39 | IQ-domain 21 |
| NR | XP_007136520.1 | 1.35E-164 | hypothetical protein PHAVU_009G052200g [Phaseolus vulgaris] |
| Swissprot | tr|Q9SF32|IQD1_ARATH | 2.00E-21 | Protein IQ-DOMAIN 1 |
| trEMBL | tr|V7ASG1|V7ASG1_PHAVU | 5.00E-165 | Uncharacterized protein {ECO:0000313|EMBL:ESW08514.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00326 | 186772 | 192005 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000326s00025801.1 | PF00612.22 | IQ | 136 | 152 | 4.80E-05 |
| Glyur000326s00025801.1 | PF13178.1 | DUF4005 | 358 | 439 | 2.60E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.693 |
| SRR1783600 | control | 2.660 |
| SRR1783602 | moderate drought stress | 1.809 |
| SRR1811619 | moderate drought stress | 1.887 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.519 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.464 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.644 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.712 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 17.913 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 17.390 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.847 |
| SRR2868004 | Drought Stress (root) | 4.440 |
| SRR2967015 | Control (root) | 3.854 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 18.393 |
| SRR9715740 | Leaf | 2.419 |
| SRR9715741 | Leaf | 4.686 |
| SRR9715739 | Root | 0.505 |
| SRR9715742 | Root | 3.903 |
| SRR9715743 | Root | 3.566 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.616 |
| SRR8400027 | Control - Root | 15.346 |