Gene detail

Gene detail information of Glyur000326s00025800.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G24300.2	0	Glycogen/starch synthases, ADP-glucose type
NR	XP_004502657.1	0	PREDICTED: soluble starch synthase 1, chloroplastic/amyloplastic-like isoform X1 [Cicer arietinum]
COG	YP_592424.1	1.00E-108	glycogen synthase [Candidatus Koribacter versatilis Ellin345]
Swissprot	tr\|Q9FNF2\|SSY1_ARATH	0	Starch synthase 1, chloroplastic/amyloplastic (Precursor)
trEMBL	tr\|I1JYR0\|I1JYR0_SOYBN	0	Starch synthase, chloroplastic/amyloplastic {ECO:0000256\|RuleBase:RU361232}

Sequence

Transcript Sequence

>Glyur000326s00025800.1
AGATGGCACGTCGGCAGATACTATACAATATTATGGAGCGAAAAATCTAGACCTGTTTTGGGTATTGGCGCTTTTTCTGGATCTGACGCAACCCATTATTTTTTCTCTTTCCAAATCCACCACTGCCACGTCATTCATGTGAATGTGATGTGTGCGGTTCACTCTGTTCTGTTTCTTTTTGTTCACTCTCACACCACACACTCACTCCTCTTTCTTCTTTTTCTGTTTTTCTCTGTTCATCACGATCCCTTTCCTCCTACGTTGGACTTCGTTCGTTCGTAACAAACCGCATGGAGTCTCTGCAACATGGTCGTCTTATCCTGCACCACATGCGCNCATCATCACCACCGCCACAACAAACTCAGTTCTATAGAAATCCACGACCGATAAAACAACTGCTGGGTTTCCGTTCTCTGCTTAATAGAGCGACTAAAAATGCNAACTTGCGATCACTTCCCAGTGATACCAATGGTGGCGCCGCCGCTTCACAAGATGGGTCATTTCCTTTCGAAGAGGAAACCCATCATCAACATAACGATGATAGGGCTCTGGTATTGGCTCGGGAGGTTGATGATTTTGGCTATCTTGTTGGCTTTCGCTTGATTCCTGACTCTGGGAAAATCACTGTCACTGAAGGAGATTCTACAACTGATGAAGTTGAAAAACTACCCAAGGCCGAGAATGCAGATGAAGTTGAGAAACTACCTGAGGGCGAGCATGCGGAAGAAAAGAAAGCTCATACTAGAGTGTCCCACAACATTGTTTTTGTTACTGCTGAGGCGGCACCTTATTCGAAGACCGGTGGCCTTGCAGATGTTTGTGGTTCTTTACCAATAGCACTGGTAGCTCGTGGACACCGTGTTATGGTTATCTCTCCCAGATACATACACGATACTCCCGAGGATCTTAAGTATTCTGCTGCAGTTGATCTTGAACACTGCGTCAAACTATTTTGCTTTGGAGGTGTTCAAGAAGTTGGCTTTTTCCATGAGTATAGGGAAGGTGTTGATTGGGTATTTGTGGATCACCCATCATTCCATAGACCAGGGAATCCTTATGGGGACAAGAATGGGACTTTTGGGGATAACCAGTTTCGGTTCACTTTACTTTGCCATGCAGCGTGTGAAGCTCCACTGGTGCTTTCCTTGGGAGGGTTCATTTATGGAGAAAAATGCTTATTCCTCGCTAATGATTGGCATGCCAGCCTAGTTCCAGTACTTTTAGCAGCAAAGTATCGTCCACATGGGGTGTATAAGGATGCACGCAGNATATTAGTGATTCACAATATTGCACATCAGGGAGTGGAACCAGCAATTACATATAGTAATTTGGGGCTGCCTCCAGAATGGCATGGAGCAATGGGTTGGGTATTCCCTACTTGGGCAAGGACACATGCTCTTGACACAGGCGAAGCTGTCAATTTTCTGAAAGGTGCCATTGTCACTGCTGATCGGATAGTAACAGTGAGCAAGGGCTATTCCTGGGAGATAACAACCAGTGAAGGTGGATGTGGTCTACATGAGATATTAAGNGGTCGAAAAAGTATTCTCAGTGGGATCACAAATGGAATTGATGTTACTGAATGGAACCCATCAACTGATGAACATATAGCGTGCAACTATTCTGCTGACNACCTTTCTGGGAAGGTCAAATGTAAGATTGNTTTGCAGAAGGAATTGGGCCTTCCAATTAGGCCTGATTGTCCGTTGATTGGATTCATCGGAAGACTTGACTACCAGAAAGGTATTGACCTGATTCGCATGGCAATTCCAGAGCTTATGGAAGGCGATGTTCAGTTTGTAATGCTTGGTTCAGGAAACCCCATTTATGAAGACTGGATGAGAGTGGCAGAGTCAACTTATAAAGATAAATTTCGGGGTTGGGTTGGCTTTAATGTTCCAGTATCTCATAGAATAACTGCAGGCTGTGATATACTGTTAATGCCATCAACATTTGAGCCCTGTGGACTAAACCAGTTGTATGCAATGAGATATGGAACTATACCAGTGGTTCATGAAACTGGAGGACTAAGAGATACTGTTCAAACTTTTAATCCATATGCTGAAGGAAGCAATGCTGAAGGCACAGGGTGGACGTTTTCTCCATTAACAAAGGAAAGCATGTTAGTGGCTCTAAGATATGCCATTCAAACATTTAATGAACACAAGTCTTCTTGGGAGGGATTGATGATAAGAGGTATGACAAGAGATTACACATGGGTAAAAGCTGCCACTCAATACGAGCAAGTCATTGAGTGGGCATTCATGGATCCACCCTATTGCTGAAAGCTGAAAGGAGAAGTTTGTATAAAAGATCAAACACAAGATTTTTTATTCAATGTCAAGGCAACATATGAGGATTTTCTTGTTCATTATTATCATGACCAATTGATAACAAGAAGCTGGCCTTTTTTTTTCCCTCTATGCTTGTTTTGAGTCCACCTGCTTGTAATATTACCATTAAACACAACTTTTTTCCTACCATTTGTTTTGGGGTACACATATCTTACCCGCATTGGGCTGTATCCTCTGATGAATATGATAGGTGCACAAAATCAGCTAGGTAGTCCTTGTGGAATTTTAATTTTTTTTTATATTGTAACTGCGCTGCAATTTAATGCTGTTCCTAAGTTTTTAATCATACAAGTGGAAAAAGCGATGGATAATTCTTAGAATTTGTGGGTTTAGCTCATCTTTACAAAATCGGTTTGTAAGGTGAAGATTGTCCATGCCTTATAAGAATTACATTGGTCATATCTTTAGTCGATGTGGATTCTCAATACACCTCTCGCTCAGGACTGGACATCTGGAGCGNGGGTGCCCNGCCTAATAACACCCTCACGTCTAGGAACTCACTTCTAGAGTATGGACAAACATAAGTGATC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00326	158574	167527	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT5

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00703	glgA	EC:2.4.1.21	Starch and sucrose metabolism	map00500
			Biofilm formation - Escherichia coli	map02026

Gene Ontology

biological_process

GO:0009058 biosynthetic process

GO:0009250 glucan biosynthetic process

molecular_function
GO:0009011 starch synthase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000326s00025800.1	PF08323.6	Glyco_transf_5	156	413	6.20E-68
Glyur000326s00025800.1	PF00534.15	Glycos_transf_1	467	618	2.60E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.954
SRR1783600	control	0.973
SRR1783602	moderate drought stress	2.308
SRR1811619	moderate drought stress	2.221

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.801
DRR006520	Root Summer glycyrrhizin high producing strain	1.786
DRR006521	Root Winter glycyrrhizin high producing strain	35.775
DRR006522	Root Winter glycyrrhizin high producing strain	35.497
DRR006523	Root Summer glycyrrhizin low producing strain	2.268
DRR006524	Root Summer glycyrrhizin low producing strain	2.308
DRR006525	Leaf Summer glycyrrhizin high producing strain	68.332
DRR006526	Leaf Summer glycyrrhizin high producing strain	67.791

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.576
SRR2868004	Drought Stress (root)	3.600
SRR2967015	Control (root)	1.913

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.310
SRR9715740	Leaf	14.018
SRR9715741	Leaf	13.569
SRR9715739	Root	0.765
SRR9715742	Root	1.492
SRR9715743	Root	1.045

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.135
SRR8749028	MeJA induced 9h	2.149
SRR8749029	MeJA induced 9h	2.149
SRR8749030	Uninduced	1.340
SRR8749031	Uninduced	0.790
SRR8749032	Uninduced	0.759

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.687
SRR8400027	Control - Root	4.854