Gene detail information of Glyur000326s00025799 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G52990.1 | 5.00E-32 | SNARE-like superfamily protein |
| NR | XP_003602260.1 | 2.45E-96 | hypothetical protein MTR_3g091610 [Medicago truncatula] |
| Swissprot | tr|Q84WF5|VAMPL_ARATH | 9.00E-21 | Probable VAMP-like protein At1g33475 |
| trEMBL | tr|G7J7F0|G7J7F0_MEDTR | 9.00E-97 | VAMP-like protein, putative {ECO:0000313|EMBL:AES72511.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00326 | 152873 | 153619 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 57.536 |
| SRR1783600 | control | 57.771 |
| SRR1783602 | moderate drought stress | 65.687 |
| SRR1811619 | moderate drought stress | 63.829 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 45.989 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 41.591 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 28.039 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 27.028 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 55.228 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 53.663 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 28.060 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 25.330 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 25.279 |
| SRR2868004 | Drought Stress (root) | 22.093 |
| SRR2967015 | Control (root) | 24.747 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 14.380 |
| SRR9715740 | Leaf | 13.205 |
| SRR9715741 | Leaf | 19.064 |
| SRR9715739 | Root | 19.780 |
| SRR9715742 | Root | 28.145 |
| SRR9715743 | Root | 25.868 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 65.584 |
| SRR8749028 | MeJA induced 9h | 104.117 |
| SRR8749029 | MeJA induced 9h | 100.231 |
| SRR8749030 | Uninduced | 53.727 |
| SRR8749031 | Uninduced | 97.357 |
| SRR8749032 | Uninduced | 98.835 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 19.521 |
| SRR8400027 | Control - Root | 23.566 |