Gene detail information of Glyur000326s00025787 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G53080.1 | 4.00E-114 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| NR | XP_004502674.1 | 0 | PREDICTED: kinesin light chain 4-like isoform X1 [Cicer arietinum] |
| COG | YP_004863660.1 | 4.00E-29 | Tfp pilus assembly protein PilF [Candidatus Chloracidobacterium thermophilum B] |
| trEMBL | tr|A0A072VBB2|A0A072VBB2_MEDTR | 0 | Kinesin light chain-like protein, putative {ECO:0000313|EMBL:KEH35460.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00326 | 26754 | 30035 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000326s00025787.1 | PF13424.1 | TPR_12 | 58 | 133 | 4.40E-09 |
| Glyur000326s00025787.1 | PF13424.1 | TPR_12 | 147 | 217 | 7.80E-15 |
| Glyur000326s00025787.1 | PF13424.1 | TPR_12 | 268 | 346 | 1.40E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.115 |
| SRR1783600 | control | 1.100 |
| SRR1783602 | moderate drought stress | 1.943 |
| SRR1811619 | moderate drought stress | 1.922 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.388 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.118 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.463 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.376 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.616 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.643 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.432 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.290 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.173 |
| SRR2868004 | Drought Stress (root) | 3.739 |
| SRR2967015 | Control (root) | 4.299 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.952 |
| SRR9715740 | Leaf | 7.848 |
| SRR9715741 | Leaf | 4.381 |
| SRR9715739 | Root | 0.044 |
| SRR9715742 | Root | 1.643 |
| SRR9715743 | Root | 1.815 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.748 |
| SRR8749028 | MeJA induced 9h | 5.156 |
| SRR8749029 | MeJA induced 9h | 6.549 |
| SRR8749030 | Uninduced | 4.618 |
| SRR8749031 | Uninduced | 2.185 |
| SRR8749032 | Uninduced | 2.378 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.507 |
| SRR8400027 | Control - Root | 5.322 |