Gene detail information of Glyur000326s00025786 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G53060.1 | 6.00E-162 | RNA-binding KH domain-containing protein |
| NR | XP_003526723.1 | 0 | PREDICTED: KH domain-containing protein At4g18375-like [Glycine max] |
| Swissprot | tr|P58223|Y4837_ARATH | 2.00E-36 | KH domain-containing protein At4g18375 |
| trEMBL | tr|K7KUU1|K7KUU1_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G13580.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00326 | 22519 | 25800 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000326s00025786.1 | PF00013.24 | KH_1 | 65 | 114 | 4.10E-10 |
| Glyur000326s00025786.1 | PF00013.24 | KH_1 | 180 | 244 | 1.50E-10 |
| Glyur000326s00025786.1 | PF00013.24 | KH_1 | 421 | 483 | 0.00022 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 21.444 |
| SRR1783600 | control | 21.366 |
| SRR1783602 | moderate drought stress | 20.909 |
| SRR1811619 | moderate drought stress | 20.935 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 18.434 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 18.328 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.552 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.678 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 11.911 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 11.786 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.382 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.004 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 30.035 |
| SRR2868004 | Drought Stress (root) | 23.303 |
| SRR2967015 | Control (root) | 22.601 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 11.628 |
| SRR9715740 | Leaf | 11.454 |
| SRR9715741 | Leaf | 13.061 |
| SRR9715739 | Root | 9.822 |
| SRR9715742 | Root | 24.039 |
| SRR9715743 | Root | 19.312 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 13.783 |
| SRR8749028 | MeJA induced 9h | 15.138 |
| SRR8749029 | MeJA induced 9h | 3.897 |
| SRR8749030 | Uninduced | 3.254 |
| SRR8749031 | Uninduced | 1.497 |
| SRR8749032 | Uninduced | 0.989 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 31.532 |
| SRR8400027 | Control - Root | 30.451 |