Gene detail information of Glyur000325s00013514 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G28510.1 | 9.00E-30 | Dof-type zinc finger DNA-binding family protein |
| NR | XP_007132171.1 | 3.05E-156 | hypothetical protein PHAVU_011G071900g [Phaseolus vulgaris] |
| Swissprot | tr|Q8LE43|DOF21_ARATH | 2.00E-53 | Dof zinc finger protein DOF2.1 |
| trEMBL | tr|T2DNA4|T2DNA4_PHAVU | 1.00E-156 | Uncharacterized protein {ECO:0000313|EMBL:ESW04165.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00325 | 150481 | 152864 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2C2-Dof |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000325s00013514.1 | PF02701.10 | zf-Dof | 36 | 97 | 6.80E-38 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.544 |
| SRR1783600 | control | 5.723 |
| SRR1783602 | moderate drought stress | 4.617 |
| SRR1811619 | moderate drought stress | 4.440 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.181 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.331 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.131 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.105 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.807 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.910 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.615 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.454 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 12.978 |
| SRR2868004 | Drought Stress (root) | 15.026 |
| SRR2967015 | Control (root) | 16.369 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.361 |
| SRR9715740 | Leaf | 5.170 |
| SRR9715741 | Leaf | 5.431 |
| SRR9715739 | Root | 4.453 |
| SRR9715742 | Root | 7.559 |
| SRR9715743 | Root | 6.606 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.624 |
| SRR8749028 | MeJA induced 9h | 1.342 |
| SRR8749029 | MeJA induced 9h | 1.262 |
| SRR8749030 | Uninduced | 0.324 |
| SRR8749031 | Uninduced | 0.240 |
| SRR8749032 | Uninduced | 0.032 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.570 |
| SRR8400027 | Control - Root | 11.422 |