Gene detail information of Glyur000325s00013513 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G02960.1 | 1.00E-72 | Ribosomal protein S12/S23 family protein |
| NR | XP_002523902.1 | 2.92E-96 | 40S ribosomal protein S23, putative [Ricinus communis] |
| COG | YP_004004208.1 | 2.00E-50 | 30S ribosomal protein S12 [Methanothermus fervidus DSM 2088] |
| Swissprot | tr|P46297|RS23_FRAAN | 1.00E-97 | 40S ribosomal protein S23 |
| trEMBL | tr|A0A067K9V2|A0A067K9V2_JATCU | 1.00E-96 | Uncharacterized protein {ECO:0000313|EMBL:KDP29075.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00325 | 145845 | 147560 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000325s00013513.1 | PF00164.20 | Ribosom_S12_S23 | 9 | 141 | 5.20E-41 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.420 |
| SRR1783600 | control | 9.372 |
| SRR1783602 | moderate drought stress | 7.492 |
| SRR1811619 | moderate drought stress | 7.556 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 18.984 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 17.175 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.656 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.518 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.714 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.904 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.175 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.060 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 59.923 |
| SRR2868004 | Drought Stress (root) | 45.716 |
| SRR2967015 | Control (root) | 46.871 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 22.315 |
| SRR9715740 | Leaf | 18.530 |
| SRR9715741 | Leaf | 16.945 |
| SRR9715739 | Root | 13.890 |
| SRR9715742 | Root | 16.691 |
| SRR9715743 | Root | 20.078 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 44.150 |
| SRR8749028 | MeJA induced 9h | 16.359 |
| SRR8749029 | MeJA induced 9h | 26.365 |
| SRR8749030 | Uninduced | 8.044 |
| SRR8749031 | Uninduced | 4.790 |
| SRR8749032 | Uninduced | 7.161 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 49.281 |
| SRR8400027 | Control - Root | 44.813 |