Gene detail information of Glyur000325s00013512 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G60210.2 | 9.00E-108 | ROP interactive partner 5 |
| NR | XP_006591019.1 | 0 | PREDICTED: interactor of constitutive active ROPs 3-like isoform X4 [Glycine max] |
| Swissprot | tr|Q9LSS5|ICR3_ARATH | 2.00E-150 | Interactor of constitutive active ROPs 3 |
| trEMBL | tr|I1LKC3|I1LKC3_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G15780.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00325 | 137581 | 143659 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 14.928 |
| SRR1783600 | control | 14.953 |
| SRR1783602 | moderate drought stress | 11.923 |
| SRR1811619 | moderate drought stress | 11.924 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.033 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.795 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.590 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.558 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 17.356 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 17.474 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 18.053 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 17.900 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 27.559 |
| SRR2868004 | Drought Stress (root) | 19.156 |
| SRR2967015 | Control (root) | 26.933 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.197 |
| SRR9715740 | Leaf | 3.197 |
| SRR9715741 | Leaf | 2.331 |
| SRR9715739 | Root | 1.242 |
| SRR9715742 | Root | 7.314 |
| SRR9715743 | Root | 6.841 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.252 |
| SRR8749028 | MeJA induced 9h | 1.685 |
| SRR8749029 | MeJA induced 9h | 1.681 |
| SRR8749030 | Uninduced | 0.142 |
| SRR8749031 | Uninduced | 0.064 |
| SRR8749032 | Uninduced | 0.198 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 34.348 |
| SRR8400027 | Control - Root | 35.799 |